Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4337 and Shewana3_4338 are separated by 186 nucleotides Shewana3_4338 and Shewana3_4339 are separated by 366 nucleotides Shewana3_4339 and Shewana3_4340 are separated by 73 nucleotides Shewana3_4340 and Shewana3_4341 are separated by 407 nucleotides
Shewana3_4337: Shewana3_4337 - hypothetical protein (RefSeq), at 225,122 to 225,862
_4337
Shewana3_4338: Shewana3_4338 - hypothetical protein (RefSeq), at 226,049 to 226,336
_4338
Shewana3_4339: Shewana3_4339 - integrase catalytic subunit (RefSeq), at 226,703 to 227,731
_4339
Shewana3_4340: Shewana3_4340 - hypothetical protein (RefSeq), at 227,805 to 228,281
_4340
Shewana3_4341: Shewana3_4341 - putative transcriptional regulator MerR (RefSeq), at 228,689 to 229,144
_4341
Position (kb) 226
227
228 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 225.724 kb on - strand, within Shewana3_4337 at 225.724 kb on - strand, within Shewana3_4337 at 225.751 kb on - strand, within Shewana3_4337 at 225.856 kb on + strand at 225.997 kb on + strand at 226.004 kb on - strand at 226.116 kb on + strand, within Shewana3_4338 at 226.159 kb on - strand, within Shewana3_4338 at 226.437 kb on + strand at 226.680 kb on - strand at 226.818 kb on + strand, within Shewana3_4339 at 226.956 kb on + strand, within Shewana3_4339 at 226.956 kb on + strand, within Shewana3_4339 at 227.033 kb on - strand, within Shewana3_4339 at 227.093 kb on - strand, within Shewana3_4339 at 227.201 kb on - strand, within Shewana3_4339 at 227.565 kb on - strand, within Shewana3_4339 at 227.742 kb on - strand at 227.884 kb on - strand, within Shewana3_4340 at 227.945 kb on - strand, within Shewana3_4340 at 227.994 kb on + strand, within Shewana3_4340 at 228.215 kb on + strand, within Shewana3_4340 at 228.558 kb on + strand at 228.582 kb on + strand at 228.652 kb on + strand at 228.687 kb on + strand at 228.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 225,724 - Shewana3_4337 0.81 -3.0 225,724 - Shewana3_4337 0.81 +0.7 225,751 - Shewana3_4337 0.85 -1.9 225,856 + -0.4 225,997 + +0.4 226,004 - +0.5 226,116 + Shewana3_4338 0.23 -0.1 226,159 - Shewana3_4338 0.38 +0.3 226,437 + -1.8 226,680 - -0.6 226,818 + Shewana3_4339 0.11 -0.4 226,956 + Shewana3_4339 0.25 +0.9 226,956 + Shewana3_4339 0.25 -2.1 227,033 - Shewana3_4339 0.32 +0.1 227,093 - Shewana3_4339 0.38 +0.4 227,201 - Shewana3_4339 0.48 +0.8 227,565 - Shewana3_4339 0.84 +0.4 227,742 - +0.1 227,884 - Shewana3_4340 0.17 +0.1 227,945 - Shewana3_4340 0.29 +0.5 227,994 + Shewana3_4340 0.40 -0.7 228,215 + Shewana3_4340 0.86 +0.0 228,558 + -1.0 228,582 + +0.3 228,652 + -0.6 228,687 + +0.2 228,711 - +1.1
Or see this region's nucleotide sequence