Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4333 and Shewana3_4334 are separated by 31 nucleotides Shewana3_4334 and Shewana3_4335 are separated by 27 nucleotides Shewana3_4335 and Shewana3_4336 are separated by 122 nucleotides Shewana3_4336 and Shewana3_4337 are separated by 2 nucleotides Shewana3_4337 and Shewana3_4338 are separated by 186 nucleotides
Shewana3_4333: Shewana3_4333 - methionine-R-sulfoxide reductase (RefSeq), at 222,837 to 223,277
_4333
Shewana3_4334: Shewana3_4334 - glutaredoxin (RefSeq), at 223,309 to 223,545
_4334
Shewana3_4335: Shewana3_4335 - peptide methionine sulfoxide reductase (RefSeq), at 223,573 to 224,061
_4335
Shewana3_4336: Shewana3_4336 - AraC family transcriptional regulator (RefSeq), at 224,184 to 225,119
_4336
Shewana3_4337: Shewana3_4337 - hypothetical protein (RefSeq), at 225,122 to 225,862
_4337
Shewana3_4338: Shewana3_4338 - hypothetical protein (RefSeq), at 226,049 to 226,336
_4338
Position (kb) 224
225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 223.239 kb on - strand at 223.673 kb on + strand, within Shewana3_4335 at 223.681 kb on - strand, within Shewana3_4335 at 223.782 kb on - strand, within Shewana3_4335 at 223.791 kb on + strand, within Shewana3_4335 at 223.997 kb on + strand, within Shewana3_4335 at 224.005 kb on - strand, within Shewana3_4335 at 224.155 kb on + strand at 224.220 kb on - strand at 224.245 kb on - strand at 224.398 kb on + strand, within Shewana3_4336 at 224.403 kb on + strand, within Shewana3_4336 at 224.406 kb on - strand, within Shewana3_4336 at 224.416 kb on - strand, within Shewana3_4336 at 224.600 kb on + strand, within Shewana3_4336 at 224.600 kb on + strand, within Shewana3_4336 at 224.606 kb on - strand, within Shewana3_4336 at 224.758 kb on - strand, within Shewana3_4336 at 224.859 kb on - strand, within Shewana3_4336 at 224.874 kb on + strand, within Shewana3_4336 at 224.923 kb on - strand, within Shewana3_4336 at 225.087 kb on - strand at 225.133 kb on + strand at 225.140 kb on + strand at 225.201 kb on - strand, within Shewana3_4337 at 225.300 kb on + strand, within Shewana3_4337 at 225.305 kb on + strand, within Shewana3_4337 at 225.402 kb on + strand, within Shewana3_4337 at 225.410 kb on - strand, within Shewana3_4337 at 225.410 kb on - strand, within Shewana3_4337 at 225.422 kb on + strand, within Shewana3_4337 at 225.592 kb on + strand, within Shewana3_4337 at 225.600 kb on - strand, within Shewana3_4337 at 225.699 kb on + strand, within Shewana3_4337 at 225.724 kb on - strand, within Shewana3_4337 at 225.724 kb on - strand, within Shewana3_4337 at 225.751 kb on - strand, within Shewana3_4337 at 225.856 kb on + strand at 225.997 kb on + strand at 226.004 kb on - strand at 226.116 kb on + strand, within Shewana3_4338
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 223,239 - +0.5 223,673 + Shewana3_4335 0.20 -1.1 223,681 - Shewana3_4335 0.22 +0.5 223,782 - Shewana3_4335 0.43 +0.1 223,791 + Shewana3_4335 0.45 +0.5 223,997 + Shewana3_4335 0.87 -1.6 224,005 - Shewana3_4335 0.88 +0.3 224,155 + +0.4 224,220 - -0.1 224,245 - -0.2 224,398 + Shewana3_4336 0.23 +0.0 224,403 + Shewana3_4336 0.23 +0.2 224,406 - Shewana3_4336 0.24 -0.7 224,416 - Shewana3_4336 0.25 -0.4 224,600 + Shewana3_4336 0.44 -0.2 224,600 + Shewana3_4336 0.44 +0.8 224,606 - Shewana3_4336 0.45 -1.8 224,758 - Shewana3_4336 0.61 -0.7 224,859 - Shewana3_4336 0.72 -0.9 224,874 + Shewana3_4336 0.74 -0.7 224,923 - Shewana3_4336 0.79 -1.0 225,087 - -0.1 225,133 + -2.0 225,140 + +0.5 225,201 - Shewana3_4337 0.11 -0.7 225,300 + Shewana3_4337 0.24 +0.5 225,305 + Shewana3_4337 0.25 +0.2 225,402 + Shewana3_4337 0.38 -0.3 225,410 - Shewana3_4337 0.39 -2.7 225,410 - Shewana3_4337 0.39 -0.1 225,422 + Shewana3_4337 0.40 -0.3 225,592 + Shewana3_4337 0.63 +0.7 225,600 - Shewana3_4337 0.65 +0.5 225,699 + Shewana3_4337 0.78 -0.4 225,724 - Shewana3_4337 0.81 -3.0 225,724 - Shewana3_4337 0.81 +0.7 225,751 - Shewana3_4337 0.85 -1.9 225,856 + -0.4 225,997 + +0.4 226,004 - +0.5 226,116 + Shewana3_4338 0.23 -0.1
Or see this region's nucleotide sequence