Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4320 and Shewana3_4321 overlap by 4 nucleotides Shewana3_4321 and Shewana3_4323 are separated by 85 nucleotides
Shewana3_4320: Shewana3_4320 - signal peptidase II (RefSeq), at 209,919 to 210,998
_4320
Shewana3_4321: Shewana3_4321 - no description, at 210,995 to 213,400
_4321
Shewana3_4323: Shewana3_4323 - MerR family transcriptional regulator (RefSeq), at 213,486 to 213,926
_4323
Position (kb) 210
211
212
213
214 Strain fitness (log2 ratio) -1
0
1 at 210.099 kb on + strand, within Shewana3_4320 at 210.177 kb on - strand, within Shewana3_4320 at 210.190 kb on + strand, within Shewana3_4320 at 210.325 kb on - strand, within Shewana3_4320 at 210.552 kb on + strand, within Shewana3_4320 at 210.646 kb on + strand, within Shewana3_4320 at 210.832 kb on - strand, within Shewana3_4320 at 210.965 kb on - strand at 211.018 kb on - strand at 211.091 kb on + strand at 211.156 kb on - strand at 211.172 kb on - strand at 211.227 kb on - strand at 211.283 kb on + strand, within Shewana3_4321 at 211.291 kb on - strand, within Shewana3_4321 at 211.307 kb on - strand, within Shewana3_4321 at 211.377 kb on - strand, within Shewana3_4321 at 211.390 kb on + strand, within Shewana3_4321 at 211.474 kb on + strand, within Shewana3_4321 at 211.538 kb on + strand, within Shewana3_4321 at 211.573 kb on - strand, within Shewana3_4321 at 211.738 kb on + strand, within Shewana3_4321 at 211.875 kb on + strand, within Shewana3_4321 at 211.912 kb on - strand, within Shewana3_4321 at 211.950 kb on - strand, within Shewana3_4321 at 211.954 kb on - strand, within Shewana3_4321 at 212.011 kb on + strand, within Shewana3_4321 at 212.011 kb on + strand, within Shewana3_4321 at 212.099 kb on - strand, within Shewana3_4321 at 212.198 kb on + strand, within Shewana3_4321 at 212.356 kb on + strand, within Shewana3_4321 at 212.432 kb on - strand, within Shewana3_4321 at 212.501 kb on - strand, within Shewana3_4321 at 212.724 kb on + strand, within Shewana3_4321 at 212.926 kb on - strand, within Shewana3_4321 at 213.090 kb on - strand, within Shewana3_4321 at 213.151 kb on + strand, within Shewana3_4321 at 213.164 kb on - strand at 213.379 kb on + strand at 213.379 kb on + strand at 213.531 kb on + strand, within Shewana3_4323 at 213.569 kb on + strand, within Shewana3_4323 at 213.706 kb on + strand, within Shewana3_4323 at 213.714 kb on - strand, within Shewana3_4323 at 213.716 kb on + strand, within Shewana3_4323 at 213.728 kb on + strand, within Shewana3_4323 at 213.736 kb on - strand, within Shewana3_4323 at 213.793 kb on - strand, within Shewana3_4323 at 213.841 kb on + strand, within Shewana3_4323 at 213.841 kb on + strand, within Shewana3_4323 at 213.849 kb on - strand, within Shewana3_4323 at 214.076 kb on - strand at 214.177 kb on + strand at 214.222 kb on + strand at 214.224 kb on + strand at 214.224 kb on + strand at 214.224 kb on + strand at 214.229 kb on + strand at 214.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 210,099 + Shewana3_4320 0.17 +0.1 210,177 - Shewana3_4320 0.24 -0.5 210,190 + Shewana3_4320 0.25 -0.2 210,325 - Shewana3_4320 0.38 +0.1 210,552 + Shewana3_4320 0.59 +0.2 210,646 + Shewana3_4320 0.67 -0.8 210,832 - Shewana3_4320 0.85 +0.6 210,965 - +0.0 211,018 - +0.4 211,091 + +0.3 211,156 - -0.1 211,172 - +0.4 211,227 - -0.2 211,283 + Shewana3_4321 0.12 +0.5 211,291 - Shewana3_4321 0.12 +0.5 211,307 - Shewana3_4321 0.13 +0.4 211,377 - Shewana3_4321 0.16 +0.3 211,390 + Shewana3_4321 0.16 -0.1 211,474 + Shewana3_4321 0.20 -0.3 211,538 + Shewana3_4321 0.23 +0.6 211,573 - Shewana3_4321 0.24 -0.0 211,738 + Shewana3_4321 0.31 -0.0 211,875 + Shewana3_4321 0.37 -0.3 211,912 - Shewana3_4321 0.38 -0.1 211,950 - Shewana3_4321 0.40 +0.1 211,954 - Shewana3_4321 0.40 +0.2 212,011 + Shewana3_4321 0.42 +0.3 212,011 + Shewana3_4321 0.42 +0.0 212,099 - Shewana3_4321 0.46 -0.1 212,198 + Shewana3_4321 0.50 -1.0 212,356 + Shewana3_4321 0.57 +0.7 212,432 - Shewana3_4321 0.60 -0.1 212,501 - Shewana3_4321 0.63 +1.5 212,724 + Shewana3_4321 0.72 +0.6 212,926 - Shewana3_4321 0.80 -0.2 213,090 - Shewana3_4321 0.87 +1.2 213,151 + Shewana3_4321 0.90 +1.4 213,164 - +0.3 213,379 + -0.0 213,379 + -0.0 213,531 + Shewana3_4323 0.10 +0.0 213,569 + Shewana3_4323 0.19 -0.0 213,706 + Shewana3_4323 0.50 -0.4 213,714 - Shewana3_4323 0.52 +0.0 213,716 + Shewana3_4323 0.52 -0.4 213,728 + Shewana3_4323 0.55 +0.3 213,736 - Shewana3_4323 0.57 +0.2 213,793 - Shewana3_4323 0.70 -0.8 213,841 + Shewana3_4323 0.80 -0.0 213,841 + Shewana3_4323 0.80 +0.1 213,849 - Shewana3_4323 0.82 -0.2 214,076 - -0.2 214,177 + -1.0 214,222 + -0.5 214,224 + -1.2 214,224 + -0.1 214,224 + +1.2 214,229 + +0.5 214,288 - +1.0
Or see this region's nucleotide sequence