Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4306 and Shewana3_4307 are separated by 84 nucleotides Shewana3_4307 and Shewana3_4308 are separated by 116 nucleotides
Shewana3_4306: Shewana3_4306 - IS4 family transposase (RefSeq), at 194,552 to 195,232
_4306
Shewana3_4307: Shewana3_4307 - transposase Tn3 family protein (RefSeq), at 195,317 to 198,304
_4307
Shewana3_4308: Shewana3_4308 - hypothetical protein (RefSeq), at 198,421 to 199,047
_4308
Position (kb) 195
196
197
198
199 Strain fitness (log2 ratio) -2
-1
0
1 at 194.446 kb on + strand at 194.446 kb on - strand at 194.469 kb on - strand at 194.492 kb on + strand at 194.493 kb on - strand at 195.378 kb on - strand at 195.497 kb on + strand at 195.850 kb on + strand, within Shewana3_4307 at 195.990 kb on - strand, within Shewana3_4307 at 195.990 kb on - strand, within Shewana3_4307 at 195.993 kb on + strand, within Shewana3_4307 at 196.212 kb on + strand, within Shewana3_4307 at 196.220 kb on - strand, within Shewana3_4307 at 196.220 kb on - strand, within Shewana3_4307 at 196.432 kb on + strand, within Shewana3_4307 at 196.593 kb on + strand, within Shewana3_4307 at 196.616 kb on - strand, within Shewana3_4307 at 197.241 kb on + strand, within Shewana3_4307 at 197.249 kb on - strand, within Shewana3_4307 at 197.435 kb on + strand, within Shewana3_4307 at 197.438 kb on - strand, within Shewana3_4307 at 197.438 kb on - strand, within Shewana3_4307 at 197.505 kb on - strand, within Shewana3_4307 at 197.581 kb on - strand, within Shewana3_4307 at 197.604 kb on + strand, within Shewana3_4307 at 197.701 kb on + strand, within Shewana3_4307 at 197.901 kb on - strand, within Shewana3_4307 at 198.072 kb on + strand at 198.102 kb on - strand at 198.206 kb on + strand at 198.214 kb on - strand at 198.220 kb on + strand at 198.225 kb on + strand at 198.225 kb on + strand at 198.226 kb on + strand at 198.714 kb on - strand, within Shewana3_4308 at 198.967 kb on + strand, within Shewana3_4308 at 199.047 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 194,446 + +0.1 194,446 - -0.4 194,469 - -1.0 194,492 + +0.0 194,493 - -0.9 195,378 - -0.2 195,497 + -2.1 195,850 + Shewana3_4307 0.18 -2.0 195,990 - Shewana3_4307 0.23 +1.1 195,990 - Shewana3_4307 0.23 +0.6 195,993 + Shewana3_4307 0.23 -1.6 196,212 + Shewana3_4307 0.30 -0.8 196,220 - Shewana3_4307 0.30 -0.7 196,220 - Shewana3_4307 0.30 +0.3 196,432 + Shewana3_4307 0.37 -0.8 196,593 + Shewana3_4307 0.43 -1.1 196,616 - Shewana3_4307 0.43 -0.0 197,241 + Shewana3_4307 0.64 -0.6 197,249 - Shewana3_4307 0.65 -0.3 197,435 + Shewana3_4307 0.71 +1.2 197,438 - Shewana3_4307 0.71 -0.1 197,438 - Shewana3_4307 0.71 -0.7 197,505 - Shewana3_4307 0.73 -0.1 197,581 - Shewana3_4307 0.76 -1.9 197,604 + Shewana3_4307 0.77 -1.4 197,701 + Shewana3_4307 0.80 -1.4 197,901 - Shewana3_4307 0.86 +0.1 198,072 + -0.4 198,102 - -0.7 198,206 + -0.2 198,214 - -0.6 198,220 + +0.1 198,225 + -0.4 198,225 + +0.0 198,226 + -0.1 198,714 - Shewana3_4308 0.47 +0.6 198,967 + Shewana3_4308 0.87 -0.1 199,047 + +0.5
Or see this region's nucleotide sequence