Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4304 and Shewana3_4305 are separated by 842 nucleotides Shewana3_4305 and Shewana3_4306 are separated by 942 nucleotides
Shewana3_4304: Shewana3_4304 - hypothetical protein (RefSeq), at 191,151 to 191,600
_4304
Shewana3_4305: Shewana3_4305 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 192,443 to 193,609
_4305
Shewana3_4306: Shewana3_4306 - IS4 family transposase (RefSeq), at 194,552 to 195,232
_4306
Position (kb) 192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 191.474 kb on + strand, within Shewana3_4304 at 191.530 kb on + strand, within Shewana3_4304 at 191.530 kb on + strand, within Shewana3_4304 at 191.530 kb on + strand, within Shewana3_4304 at 191.530 kb on + strand, within Shewana3_4304 at 191.538 kb on - strand, within Shewana3_4304 at 191.538 kb on - strand, within Shewana3_4304 at 191.538 kb on - strand, within Shewana3_4304 at 191.540 kb on + strand, within Shewana3_4304 at 191.549 kb on - strand, within Shewana3_4304 at 191.549 kb on - strand, within Shewana3_4304 at 191.549 kb on - strand, within Shewana3_4304 at 191.559 kb on - strand at 191.603 kb on + strand at 191.619 kb on - strand at 191.761 kb on + strand at 191.872 kb on + strand at 191.880 kb on - strand at 191.965 kb on + strand at 191.983 kb on + strand at 191.989 kb on - strand at 192.197 kb on + strand at 192.197 kb on + strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.205 kb on - strand at 192.212 kb on + strand at 192.212 kb on + strand at 192.215 kb on - strand at 192.215 kb on - strand at 192.220 kb on - strand at 192.220 kb on - strand at 192.222 kb on + strand at 192.223 kb on + strand at 192.230 kb on - strand at 192.230 kb on - strand at 192.231 kb on - strand at 192.231 kb on - strand at 192.237 kb on - strand at 192.237 kb on - strand at 192.268 kb on + strand at 192.273 kb on + strand at 192.307 kb on - strand at 192.316 kb on - strand at 192.320 kb on + strand at 192.320 kb on + strand at 192.323 kb on + strand at 192.326 kb on - strand at 192.328 kb on + strand at 192.328 kb on + strand at 192.328 kb on - strand at 192.328 kb on - strand at 192.328 kb on - strand at 192.328 kb on - strand at 192.330 kb on + strand at 192.330 kb on + strand at 192.330 kb on + strand at 192.330 kb on + strand at 192.330 kb on + strand at 192.330 kb on + strand at 192.330 kb on + strand at 192.336 kb on - strand at 192.336 kb on - strand at 192.336 kb on - strand at 192.338 kb on - strand at 192.338 kb on - strand at 192.346 kb on - strand at 192.400 kb on + strand at 192.405 kb on + strand at 192.405 kb on + strand at 192.405 kb on + strand at 192.418 kb on - strand at 192.418 kb on - strand at 192.423 kb on - strand at 192.428 kb on + strand at 192.499 kb on + strand at 192.499 kb on + strand at 192.500 kb on + strand at 192.500 kb on + strand at 192.514 kb on + strand at 192.514 kb on + strand at 192.519 kb on + strand at 192.522 kb on - strand at 192.522 kb on - strand at 192.522 kb on - strand at 192.527 kb on - strand at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.683 kb on + strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.691 kb on - strand, within Shewana3_4305 at 192.696 kb on - strand, within Shewana3_4305 at 192.701 kb on - strand, within Shewana3_4305 at 192.770 kb on - strand, within Shewana3_4305 at 192.818 kb on + strand, within Shewana3_4305 at 192.826 kb on - strand, within Shewana3_4305 at 192.826 kb on - strand, within Shewana3_4305 at 192.826 kb on - strand, within Shewana3_4305 at 192.828 kb on + strand, within Shewana3_4305 at 192.831 kb on - strand, within Shewana3_4305 at 192.840 kb on + strand, within Shewana3_4305 at 192.840 kb on + strand, within Shewana3_4305 at 192.840 kb on + strand, within Shewana3_4305 at 192.840 kb on + strand, within Shewana3_4305 at 192.848 kb on - strand, within Shewana3_4305 at 192.848 kb on - strand, within Shewana3_4305 at 192.870 kb on - strand, within Shewana3_4305 at 192.873 kb on + strand, within Shewana3_4305 at 192.873 kb on + strand, within Shewana3_4305 at 192.873 kb on + strand, within Shewana3_4305 at 192.873 kb on + strand, within Shewana3_4305 at 192.873 kb on + strand, within Shewana3_4305 at 192.873 kb on + strand, within Shewana3_4305 at 192.877 kb on - strand, within Shewana3_4305 at 192.881 kb on - strand, within Shewana3_4305 at 192.881 kb on - strand, within Shewana3_4305 at 192.881 kb on - strand, within Shewana3_4305 at 192.882 kb on + strand, within Shewana3_4305 at 192.883 kb on + strand, within Shewana3_4305 at 192.883 kb on + strand, within Shewana3_4305 at 192.883 kb on + strand, within Shewana3_4305 at 192.883 kb on + strand, within Shewana3_4305 at 192.883 kb on + strand, within Shewana3_4305 at 192.890 kb on - strand, within Shewana3_4305 at 192.890 kb on - strand, within Shewana3_4305 at 192.890 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.891 kb on - strand, within Shewana3_4305 at 192.896 kb on - strand, within Shewana3_4305 at 192.905 kb on - strand, within Shewana3_4305 at 192.905 kb on - strand, within Shewana3_4305 at 192.905 kb on - strand, within Shewana3_4305 at 192.929 kb on + strand, within Shewana3_4305 at 192.951 kb on - strand, within Shewana3_4305 at 193.128 kb on + strand, within Shewana3_4305 at 193.136 kb on - strand, within Shewana3_4305 at 193.144 kb on + strand, within Shewana3_4305 at 193.149 kb on - strand, within Shewana3_4305 at 193.159 kb on - strand, within Shewana3_4305 at 193.159 kb on - strand, within Shewana3_4305 at 193.269 kb on + strand, within Shewana3_4305 at 193.269 kb on + strand, within Shewana3_4305 at 193.269 kb on + strand, within Shewana3_4305 at 193.269 kb on + strand, within Shewana3_4305 at 193.277 kb on - strand, within Shewana3_4305 at 193.277 kb on - strand, within Shewana3_4305 at 193.277 kb on - strand, within Shewana3_4305 at 193.277 kb on - strand, within Shewana3_4305 at 193.282 kb on + strand, within Shewana3_4305 at 193.292 kb on + strand, within Shewana3_4305 at 193.360 kb on + strand, within Shewana3_4305 at 193.368 kb on - strand, within Shewana3_4305 at 193.370 kb on + strand, within Shewana3_4305 at 193.447 kb on - strand, within Shewana3_4305 at 193.457 kb on - strand, within Shewana3_4305 at 193.494 kb on - strand at 193.572 kb on - strand at 193.572 kb on - strand at 193.584 kb on - strand at 193.730 kb on + strand at 193.730 kb on + strand at 193.730 kb on + strand at 193.738 kb on - strand at 193.772 kb on + strand at 193.820 kb on + strand at 193.848 kb on - strand at 193.848 kb on - strand at 193.859 kb on + strand at 193.859 kb on + strand at 193.869 kb on - strand at 193.883 kb on - strand at 193.954 kb on + strand at 193.955 kb on + strand at 194.009 kb on - strand at 194.045 kb on + strand at 194.045 kb on + strand at 194.045 kb on + strand at 194.045 kb on + strand at 194.053 kb on - strand at 194.053 kb on - strand at 194.069 kb on + strand at 194.078 kb on - strand at 194.100 kb on - strand at 194.145 kb on - strand at 194.169 kb on + strand at 194.177 kb on - strand at 194.179 kb on + strand at 194.179 kb on + strand at 194.187 kb on - strand at 194.192 kb on - strand at 194.210 kb on - strand at 194.212 kb on - strand at 194.212 kb on - strand at 194.291 kb on + strand at 194.446 kb on + strand at 194.446 kb on - strand at 194.469 kb on - strand at 194.492 kb on + strand at 194.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 191,474 + Shewana3_4304 0.72 -0.2 191,530 + Shewana3_4304 0.84 -0.7 191,530 + Shewana3_4304 0.84 +0.3 191,530 + Shewana3_4304 0.84 +0.0 191,530 + Shewana3_4304 0.84 +0.1 191,538 - Shewana3_4304 0.86 +0.5 191,538 - Shewana3_4304 0.86 -0.2 191,538 - Shewana3_4304 0.86 +0.0 191,540 + Shewana3_4304 0.86 +0.1 191,549 - Shewana3_4304 0.88 +0.3 191,549 - Shewana3_4304 0.88 -0.0 191,549 - Shewana3_4304 0.88 -0.3 191,559 - -2.2 191,603 + +0.3 191,619 - -0.6 191,761 + +0.8 191,872 + +0.2 191,880 - -2.4 191,965 + +0.1 191,983 + +0.5 191,989 - +0.1 192,197 + -0.4 192,197 + -2.3 192,205 - -0.3 192,205 - -0.1 192,205 - -1.0 192,205 - +0.6 192,205 - +0.4 192,205 - +0.0 192,205 - -1.7 192,205 - +0.2 192,205 - +0.3 192,212 + -0.8 192,212 + -0.5 192,215 - -0.5 192,215 - -1.5 192,220 - -0.2 192,220 - +0.4 192,222 + -1.5 192,223 + -1.5 192,230 - -0.9 192,230 - -0.2 192,231 - -0.4 192,231 - +0.0 192,237 - +0.2 192,237 - +0.8 192,268 + -0.8 192,273 + -2.0 192,307 - +0.3 192,316 - -0.2 192,320 + +0.0 192,320 + +0.1 192,323 + +0.1 192,326 - +0.3 192,328 + -0.8 192,328 + -1.3 192,328 - -0.4 192,328 - +0.1 192,328 - -0.8 192,328 - -0.3 192,330 + -0.2 192,330 + -0.2 192,330 + -0.1 192,330 + +0.1 192,330 + -0.1 192,330 + -0.8 192,330 + +0.3 192,336 - +1.0 192,336 - -0.1 192,336 - +0.9 192,338 - -0.2 192,338 - -0.9 192,346 - -1.3 192,400 + -1.5 192,405 + -1.4 192,405 + +0.0 192,405 + -2.4 192,418 - -1.2 192,418 - -0.4 192,423 - +0.1 192,428 + -0.5 192,499 + -2.7 192,499 + -0.4 192,500 + -2.6 192,500 + -0.9 192,514 + -0.6 192,514 + -0.8 192,519 + +0.4 192,522 - -2.3 192,522 - -0.8 192,522 - -1.2 192,527 - +0.0 192,683 + Shewana3_4305 0.21 +0.5 192,683 + Shewana3_4305 0.21 -1.5 192,683 + Shewana3_4305 0.21 +1.5 192,683 + Shewana3_4305 0.21 -1.4 192,683 + Shewana3_4305 0.21 -0.5 192,683 + Shewana3_4305 0.21 -1.6 192,683 + Shewana3_4305 0.21 -0.4 192,683 + Shewana3_4305 0.21 -2.6 192,683 + Shewana3_4305 0.21 -1.9 192,683 + Shewana3_4305 0.21 -0.4 192,683 + Shewana3_4305 0.21 +0.5 192,691 - Shewana3_4305 0.21 -0.1 192,691 - Shewana3_4305 0.21 -1.0 192,691 - Shewana3_4305 0.21 -0.4 192,691 - Shewana3_4305 0.21 -0.1 192,691 - Shewana3_4305 0.21 -0.6 192,691 - Shewana3_4305 0.21 +1.0 192,691 - Shewana3_4305 0.21 -0.2 192,696 - Shewana3_4305 0.22 -1.1 192,701 - Shewana3_4305 0.22 -0.7 192,770 - Shewana3_4305 0.28 -0.4 192,818 + Shewana3_4305 0.32 -0.1 192,826 - Shewana3_4305 0.33 +0.2 192,826 - Shewana3_4305 0.33 -1.5 192,826 - Shewana3_4305 0.33 -1.3 192,828 + Shewana3_4305 0.33 +0.7 192,831 - Shewana3_4305 0.33 -0.7 192,840 + Shewana3_4305 0.34 +0.5 192,840 + Shewana3_4305 0.34 -0.5 192,840 + Shewana3_4305 0.34 +0.5 192,840 + Shewana3_4305 0.34 +0.5 192,848 - Shewana3_4305 0.35 -0.9 192,848 - Shewana3_4305 0.35 -2.9 192,870 - Shewana3_4305 0.37 -2.9 192,873 + Shewana3_4305 0.37 -1.5 192,873 + Shewana3_4305 0.37 -0.5 192,873 + Shewana3_4305 0.37 -1.1 192,873 + Shewana3_4305 0.37 -0.7 192,873 + Shewana3_4305 0.37 -1.6 192,873 + Shewana3_4305 0.37 -1.1 192,877 - Shewana3_4305 0.37 -0.2 192,881 - Shewana3_4305 0.38 -0.3 192,881 - Shewana3_4305 0.38 -0.6 192,881 - Shewana3_4305 0.38 -1.9 192,882 + Shewana3_4305 0.38 +1.5 192,883 + Shewana3_4305 0.38 +1.5 192,883 + Shewana3_4305 0.38 -2.1 192,883 + Shewana3_4305 0.38 -0.1 192,883 + Shewana3_4305 0.38 +0.1 192,883 + Shewana3_4305 0.38 +0.2 192,890 - Shewana3_4305 0.38 -2.2 192,890 - Shewana3_4305 0.38 -1.2 192,890 - Shewana3_4305 0.38 +0.5 192,891 - Shewana3_4305 0.38 +0.1 192,891 - Shewana3_4305 0.38 -0.8 192,891 - Shewana3_4305 0.38 -0.5 192,891 - Shewana3_4305 0.38 -1.6 192,891 - Shewana3_4305 0.38 +0.5 192,891 - Shewana3_4305 0.38 -0.6 192,891 - Shewana3_4305 0.38 -0.7 192,891 - Shewana3_4305 0.38 -0.3 192,896 - Shewana3_4305 0.39 -1.1 192,905 - Shewana3_4305 0.40 -0.5 192,905 - Shewana3_4305 0.40 -0.6 192,905 - Shewana3_4305 0.40 +0.1 192,929 + Shewana3_4305 0.42 +1.5 192,951 - Shewana3_4305 0.44 -3.6 193,128 + Shewana3_4305 0.59 -1.5 193,136 - Shewana3_4305 0.59 -1.9 193,144 + Shewana3_4305 0.60 +0.9 193,149 - Shewana3_4305 0.60 -1.7 193,159 - Shewana3_4305 0.61 +0.5 193,159 - Shewana3_4305 0.61 +0.5 193,269 + Shewana3_4305 0.71 -2.5 193,269 + Shewana3_4305 0.71 -0.7 193,269 + Shewana3_4305 0.71 -0.1 193,269 + Shewana3_4305 0.71 -0.5 193,277 - Shewana3_4305 0.71 -0.9 193,277 - Shewana3_4305 0.71 +0.5 193,277 - Shewana3_4305 0.71 -1.6 193,277 - Shewana3_4305 0.71 +0.2 193,282 + Shewana3_4305 0.72 -0.1 193,292 + Shewana3_4305 0.73 +0.1 193,360 + Shewana3_4305 0.79 +0.5 193,368 - Shewana3_4305 0.79 +0.5 193,370 + Shewana3_4305 0.79 +1.5 193,447 - Shewana3_4305 0.86 -0.2 193,457 - Shewana3_4305 0.87 +0.5 193,494 - -1.0 193,572 - -0.5 193,572 - -0.8 193,584 - +1.5 193,730 + -0.4 193,730 + -0.4 193,730 + -0.5 193,738 - -0.5 193,772 + +1.5 193,820 + +0.1 193,848 - -0.1 193,848 - -1.1 193,859 + -1.5 193,859 + -0.5 193,869 - -0.1 193,883 - -0.9 193,954 + -0.2 193,955 + -1.5 194,009 - -1.5 194,045 + -0.5 194,045 + -1.7 194,045 + -0.5 194,045 + -0.1 194,053 - -1.0 194,053 - +0.2 194,069 + -0.4 194,078 - -0.1 194,100 - +0.3 194,145 - -0.1 194,169 + -1.7 194,177 - -0.5 194,179 + -0.6 194,179 + -0.6 194,187 - -0.9 194,192 - +0.1 194,210 - -0.9 194,212 - -2.1 194,212 - -0.7 194,291 + -0.6 194,446 + +0.1 194,446 - -0.4 194,469 - -1.0 194,492 + +0.0 194,493 - -0.9
Or see this region's nucleotide sequence