Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4285 and Shewana3_4286 are separated by 136 nucleotides Shewana3_4286 and Shewana3_4287 overlap by 4 nucleotides Shewana3_4287 and Shewana3_4288 are separated by 23 nucleotides Shewana3_4288 and Shewana3_4289 are separated by 115 nucleotides
Shewana3_4285: Shewana3_4285 - hypothetical protein (RefSeq), at 169,058 to 169,498
_4285
Shewana3_4286: Shewana3_4286 - hypothetical protein (RefSeq), at 169,635 to 170,150
_4286
Shewana3_4287: Shewana3_4287 - CopA family copper resistance protein (RefSeq), at 170,147 to 172,075
_4287
Shewana3_4288: Shewana3_4288 - copper resistance B precursor (RefSeq), at 172,099 to 172,812
_4288
Shewana3_4289: Shewana3_4289 - copper resistance protein CopC (RefSeq), at 172,928 to 173,350
_4289
Position (kb) 170
171
172
173 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 169.276 kb on + strand, within Shewana3_4285 at 169.644 kb on + strand at 169.752 kb on - strand, within Shewana3_4286 at 169.789 kb on + strand, within Shewana3_4286 at 169.864 kb on + strand, within Shewana3_4286 at 169.874 kb on + strand, within Shewana3_4286 at 170.128 kb on + strand at 170.136 kb on - strand at 170.222 kb on + strand at 170.533 kb on - strand, within Shewana3_4287 at 170.698 kb on - strand, within Shewana3_4287 at 170.704 kb on - strand, within Shewana3_4287 at 170.984 kb on + strand, within Shewana3_4287 at 170.985 kb on + strand, within Shewana3_4287 at 170.996 kb on + strand, within Shewana3_4287 at 171.330 kb on + strand, within Shewana3_4287 at 171.338 kb on - strand, within Shewana3_4287 at 171.515 kb on + strand, within Shewana3_4287 at 171.709 kb on - strand, within Shewana3_4287 at 171.812 kb on + strand, within Shewana3_4287 at 171.879 kb on - strand, within Shewana3_4287 at 171.950 kb on + strand at 172.244 kb on + strand, within Shewana3_4288 at 172.252 kb on - strand, within Shewana3_4288 at 172.254 kb on + strand, within Shewana3_4288 at 172.262 kb on - strand, within Shewana3_4288 at 172.274 kb on - strand, within Shewana3_4288 at 172.357 kb on + strand, within Shewana3_4288 at 172.357 kb on + strand, within Shewana3_4288 at 172.515 kb on - strand, within Shewana3_4288 at 172.515 kb on - strand, within Shewana3_4288 at 172.620 kb on + strand, within Shewana3_4288 at 172.652 kb on + strand, within Shewana3_4288 at 172.696 kb on - strand, within Shewana3_4288 at 172.832 kb on + strand at 172.832 kb on + strand at 172.832 kb on + strand at 172.840 kb on - strand at 172.840 kb on - strand at 172.966 kb on + strand at 173.007 kb on + strand, within Shewana3_4289 at 173.007 kb on + strand, within Shewana3_4289 at 173.007 kb on + strand, within Shewana3_4289 at 173.010 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.015 kb on - strand, within Shewana3_4289 at 173.060 kb on - strand, within Shewana3_4289 at 173.072 kb on + strand, within Shewana3_4289
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 169,276 + Shewana3_4285 0.49 +0.3 169,644 + -1.1 169,752 - Shewana3_4286 0.23 -2.2 169,789 + Shewana3_4286 0.30 -0.4 169,864 + Shewana3_4286 0.44 -0.3 169,874 + Shewana3_4286 0.46 -0.0 170,128 + +0.2 170,136 - -1.4 170,222 + +0.8 170,533 - Shewana3_4287 0.20 -2.4 170,698 - Shewana3_4287 0.29 -0.2 170,704 - Shewana3_4287 0.29 -0.7 170,984 + Shewana3_4287 0.43 +0.3 170,985 + Shewana3_4287 0.43 +0.1 170,996 + Shewana3_4287 0.44 -0.1 171,330 + Shewana3_4287 0.61 -2.5 171,338 - Shewana3_4287 0.62 -1.3 171,515 + Shewana3_4287 0.71 +0.7 171,709 - Shewana3_4287 0.81 -3.0 171,812 + Shewana3_4287 0.86 +0.3 171,879 - Shewana3_4287 0.90 -2.7 171,950 + -0.1 172,244 + Shewana3_4288 0.20 +0.5 172,252 - Shewana3_4288 0.21 -1.0 172,254 + Shewana3_4288 0.22 -0.0 172,262 - Shewana3_4288 0.23 +1.5 172,274 - Shewana3_4288 0.25 -1.7 172,357 + Shewana3_4288 0.36 +0.9 172,357 + Shewana3_4288 0.36 +0.4 172,515 - Shewana3_4288 0.58 -1.0 172,515 - Shewana3_4288 0.58 +0.2 172,620 + Shewana3_4288 0.73 +0.2 172,652 + Shewana3_4288 0.77 +0.5 172,696 - Shewana3_4288 0.84 -0.5 172,832 + -0.5 172,832 + +0.4 172,832 + +0.3 172,840 - -1.7 172,840 - +0.5 172,966 + -0.4 173,007 + Shewana3_4289 0.19 -0.4 173,007 + Shewana3_4289 0.19 -0.1 173,007 + Shewana3_4289 0.19 -0.2 173,010 - Shewana3_4289 0.19 -0.9 173,015 - Shewana3_4289 0.21 -1.6 173,015 - Shewana3_4289 0.21 -1.5 173,015 - Shewana3_4289 0.21 +1.5 173,060 - Shewana3_4289 0.31 -0.5 173,072 + Shewana3_4289 0.34 +0.7
Or see this region's nucleotide sequence