Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4281 and Shewana3_4282 are separated by 60 nucleotides Shewana3_4282 and Shewana3_4283 are separated by 9 nucleotides Shewana3_4283 and Shewana3_4284 are separated by 495 nucleotides
Shewana3_4281: Shewana3_4281 - hypothetical protein (RefSeq), at 164,071 to 166,488
_4281
Shewana3_4282: Shewana3_4282 - IS4 family transposase (RefSeq), at 166,549 to 167,286
_4282
Shewana3_4283: Shewana3_4283 - transposase (RefSeq), at 167,296 to 167,466
_4283
Shewana3_4284: Shewana3_4284 - integrase catalytic subunit (RefSeq), at 167,962 to 168,783
_4284
Position (kb) 167
168 Strain fitness (log2 ratio) -2
-1
0
1
2 at 167.316 kb on + strand, within Shewana3_4283 at 167.324 kb on - strand, within Shewana3_4283 at 167.571 kb on - strand at 167.575 kb on + strand at 167.598 kb on + strand at 167.650 kb on - strand at 167.662 kb on + strand at 167.715 kb on - strand at 167.794 kb on - strand at 167.796 kb on - strand at 167.796 kb on - strand at 167.796 kb on - strand at 167.944 kb on + strand at 168.069 kb on + strand, within Shewana3_4284 at 168.147 kb on + strand, within Shewana3_4284 at 168.155 kb on + strand, within Shewana3_4284 at 168.155 kb on - strand, within Shewana3_4284 at 168.163 kb on - strand, within Shewana3_4284 at 168.190 kb on - strand, within Shewana3_4284 at 168.252 kb on - strand, within Shewana3_4284 at 168.276 kb on + strand, within Shewana3_4284 at 168.308 kb on + strand, within Shewana3_4284 at 168.308 kb on - strand, within Shewana3_4284 at 168.396 kb on - strand, within Shewana3_4284
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 167,316 + Shewana3_4283 0.12 +0.6 167,324 - Shewana3_4283 0.16 +0.6 167,571 - +0.4 167,575 + +0.5 167,598 + +0.4 167,650 - +2.0 167,662 + +0.5 167,715 - +0.3 167,794 - -0.8 167,796 - -0.5 167,796 - +0.3 167,796 - +0.3 167,944 + +0.4 168,069 + Shewana3_4284 0.13 -2.1 168,147 + Shewana3_4284 0.23 -0.5 168,155 + Shewana3_4284 0.23 -0.7 168,155 - Shewana3_4284 0.23 +0.6 168,163 - Shewana3_4284 0.24 +0.4 168,190 - Shewana3_4284 0.28 -0.3 168,252 - Shewana3_4284 0.35 +0.2 168,276 + Shewana3_4284 0.38 -0.1 168,308 + Shewana3_4284 0.42 +1.5 168,308 - Shewana3_4284 0.42 +0.4 168,396 - Shewana3_4284 0.53 +0.9
Or see this region's nucleotide sequence