Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4276 and Shewana3_4277 are separated by 120 nucleotides Shewana3_4277 and Shewana3_4278 are separated by 75 nucleotides Shewana3_4278 and Shewana3_4279 are separated by 384 nucleotides
Shewana3_4276: Shewana3_4276 - site-binding protein, DNA replication region (RefSeq), at 157,936 to 158,808
_4276
Shewana3_4277: Shewana3_4277 - OmpA/MotB domain-containing protein (RefSeq), at 158,929 to 159,672
_4277
Shewana3_4278: Shewana3_4278 - hypothetical protein (RefSeq), at 159,748 to 160,467
_4278
Shewana3_4279: Shewana3_4279 - hypothetical protein (RefSeq), at 160,852 to 161,304
_4279
Position (kb)
159
160
161 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 158.806 kb on - strand at 159.088 kb on + strand, within Shewana3_4277 at 159.088 kb on + strand, within Shewana3_4277 at 159.096 kb on + strand, within Shewana3_4277 at 159.391 kb on - strand, within Shewana3_4277 at 159.449 kb on + strand, within Shewana3_4277 at 159.526 kb on - strand, within Shewana3_4277 at 159.612 kb on + strand at 159.635 kb on + strand at 159.663 kb on + strand at 159.671 kb on - strand at 159.671 kb on - strand at 159.765 kb on + strand at 159.902 kb on + strand, within Shewana3_4278 at 160.023 kb on + strand, within Shewana3_4278 at 160.036 kb on + strand, within Shewana3_4278 at 160.187 kb on - strand, within Shewana3_4278 at 160.311 kb on + strand, within Shewana3_4278 at 160.389 kb on + strand, within Shewana3_4278 at 160.430 kb on + strand at 160.446 kb on + strand at 160.446 kb on + strand at 160.446 kb on + strand at 160.451 kb on + strand at 160.451 kb on + strand at 160.454 kb on - strand at 160.454 kb on - strand at 160.454 kb on - strand at 160.454 kb on - strand at 160.499 kb on - strand at 160.547 kb on + strand at 160.605 kb on + strand at 160.608 kb on - strand at 160.664 kb on + strand at 160.919 kb on - strand, within Shewana3_4279 at 160.926 kb on - strand, within Shewana3_4279 at 161.111 kb on + strand, within Shewana3_4279 at 161.235 kb on - strand, within Shewana3_4279 at 161.254 kb on - strand, within Shewana3_4279 at 161.298 kb on + strand at 161.306 kb on - strand at 161.306 kb on - strand at 161.312 kb on + strand at 161.312 kb on - strand at 161.320 kb on - strand at 161.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 158,806 - -1.1 159,088 + Shewana3_4277 0.21 +0.8 159,088 + Shewana3_4277 0.21 +0.5 159,096 + Shewana3_4277 0.22 -0.1 159,391 - Shewana3_4277 0.62 -1.4 159,449 + Shewana3_4277 0.70 +0.0 159,526 - Shewana3_4277 0.80 -0.6 159,612 + -0.2 159,635 + -0.7 159,663 + +0.8 159,671 - -2.2 159,671 - +0.5 159,765 + +0.2 159,902 + Shewana3_4278 0.21 +0.5 160,023 + Shewana3_4278 0.38 +0.9 160,036 + Shewana3_4278 0.40 -0.2 160,187 - Shewana3_4278 0.61 +0.4 160,311 + Shewana3_4278 0.78 +1.2 160,389 + Shewana3_4278 0.89 -0.3 160,430 + +0.2 160,446 + +0.5 160,446 + +0.5 160,446 + +0.3 160,451 + +0.5 160,451 + +0.6 160,454 - -1.7 160,454 - +0.2 160,454 - -0.1 160,454 - -3.5 160,499 - -0.8 160,547 + +0.1 160,605 + -1.5 160,608 - -0.5 160,664 + -0.1 160,919 - Shewana3_4279 0.15 +0.5 160,926 - Shewana3_4279 0.16 -0.3 161,111 + Shewana3_4279 0.57 +0.4 161,235 - Shewana3_4279 0.85 -1.4 161,254 - Shewana3_4279 0.89 +0.9 161,298 + -0.5 161,306 - -0.7 161,306 - +0.3 161,312 + +0.1 161,312 - -0.1 161,320 - -1.5 161,320 - +0.5
Or see this region's nucleotide sequence