Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4265 and Shewana3_4266 overlap by 1 nucleotides Shewana3_4266 and Shewana3_4267 are separated by 9 nucleotides Shewana3_4267 and Shewana3_4268 are separated by 727 nucleotides
Shewana3_4265: Shewana3_4265 - relaxase (RefSeq), at 141,356 to 144,181
_4265
Shewana3_4266: Shewana3_4266 - hypothetical protein (RefSeq), at 144,181 to 144,900
_4266
Shewana3_4267: Shewana3_4267 - hypothetical protein (RefSeq), at 144,910 to 145,329
_4267
Shewana3_4268: Shewana3_4268 - hypothetical protein (RefSeq), at 146,057 to 147,124
_4268
Position (kb) 144
145
146 Strain fitness (log2 ratio) -1
0
1 at 143.930 kb on + strand at 143.948 kb on - strand at 144.380 kb on + strand, within Shewana3_4266 at 144.395 kb on - strand, within Shewana3_4266 at 144.540 kb on + strand, within Shewana3_4266 at 144.584 kb on + strand, within Shewana3_4266 at 144.591 kb on + strand, within Shewana3_4266 at 144.620 kb on + strand, within Shewana3_4266 at 144.650 kb on + strand, within Shewana3_4266 at 144.823 kb on + strand, within Shewana3_4266 at 144.828 kb on + strand, within Shewana3_4266 at 144.889 kb on + strand at 144.972 kb on - strand, within Shewana3_4267 at 145.099 kb on - strand, within Shewana3_4267 at 145.124 kb on + strand, within Shewana3_4267 at 145.201 kb on - strand, within Shewana3_4267 at 145.239 kb on - strand, within Shewana3_4267 at 145.273 kb on - strand, within Shewana3_4267 at 145.393 kb on - strand at 145.811 kb on + strand at 145.819 kb on - strand at 146.000 kb on + strand at 146.252 kb on - strand, within Shewana3_4268
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 143,930 + +0.4 143,948 - -0.2 144,380 + Shewana3_4266 0.28 -0.1 144,395 - Shewana3_4266 0.30 -0.4 144,540 + Shewana3_4266 0.50 +0.1 144,584 + Shewana3_4266 0.56 +0.6 144,591 + Shewana3_4266 0.57 +0.1 144,620 + Shewana3_4266 0.61 -0.9 144,650 + Shewana3_4266 0.65 -0.1 144,823 + Shewana3_4266 0.89 +0.2 144,828 + Shewana3_4266 0.90 -1.1 144,889 + -0.4 144,972 - Shewana3_4267 0.15 +0.9 145,099 - Shewana3_4267 0.45 +0.6 145,124 + Shewana3_4267 0.51 -1.1 145,201 - Shewana3_4267 0.69 +0.7 145,239 - Shewana3_4267 0.78 +0.6 145,273 - Shewana3_4267 0.86 +0.8 145,393 - +0.6 145,811 + -0.2 145,819 - +0.5 146,000 + +0.7 146,252 - Shewana3_4268 0.18 -0.9
Or see this region's nucleotide sequence