Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4260 and Shewana3_4261 are separated by 9 nucleotides Shewana3_4261 and Shewana3_4262 are separated by 71 nucleotides Shewana3_4262 and Shewana3_4263 are separated by 225 nucleotides Shewana3_4263 and Shewana3_4264 are separated by 12 nucleotides
Shewana3_4260: Shewana3_4260 - hypothetical protein (RefSeq), at 137,306 to 137,962
_4260
Shewana3_4261: Shewana3_4261 - hypothetical protein (RefSeq), at 137,972 to 138,256
_4261
Shewana3_4262: Shewana3_4262 - hypothetical protein (RefSeq), at 138,328 to 138,615
_4262
Shewana3_4263: Shewana3_4263 - hypothetical protein (RefSeq), at 138,841 to 139,476
_4263
Shewana3_4264: Shewana3_4264 - hypothetical protein (RefSeq), at 139,489 to 141,363
_4264
Position (kb)
138
139
140 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 137.936 kb on - strand at 138.011 kb on + strand, within Shewana3_4261 at 138.036 kb on + strand, within Shewana3_4261 at 138.181 kb on + strand, within Shewana3_4261 at 138.833 kb on + strand at 138.839 kb on - strand at 138.889 kb on + strand at 138.964 kb on - strand, within Shewana3_4263 at 138.987 kb on + strand, within Shewana3_4263 at 138.995 kb on - strand, within Shewana3_4263 at 138.995 kb on - strand, within Shewana3_4263 at 138.995 kb on - strand, within Shewana3_4263 at 139.004 kb on + strand, within Shewana3_4263 at 139.125 kb on + strand, within Shewana3_4263 at 139.178 kb on - strand, within Shewana3_4263 at 139.196 kb on - strand, within Shewana3_4263 at 139.294 kb on - strand, within Shewana3_4263 at 139.322 kb on + strand, within Shewana3_4263 at 139.449 kb on + strand at 139.451 kb on + strand at 139.464 kb on - strand at 139.520 kb on + strand at 139.520 kb on + strand at 139.600 kb on - strand at 139.659 kb on - strand at 139.694 kb on + strand, within Shewana3_4264 at 139.780 kb on - strand, within Shewana3_4264 at 139.841 kb on + strand, within Shewana3_4264 at 139.844 kb on - strand, within Shewana3_4264 at 140.059 kb on + strand, within Shewana3_4264 at 140.143 kb on - strand, within Shewana3_4264 at 140.170 kb on - strand, within Shewana3_4264 at 140.265 kb on - strand, within Shewana3_4264 at 140.311 kb on - strand, within Shewana3_4264 at 140.398 kb on + strand, within Shewana3_4264
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 137,936 - +0.5 138,011 + Shewana3_4261 0.14 -0.1 138,036 + Shewana3_4261 0.22 -0.9 138,181 + Shewana3_4261 0.73 -0.0 138,833 + -0.0 138,839 - -0.9 138,889 + -0.7 138,964 - Shewana3_4263 0.19 -1.1 138,987 + Shewana3_4263 0.23 -2.2 138,995 - Shewana3_4263 0.24 -0.3 138,995 - Shewana3_4263 0.24 -1.5 138,995 - Shewana3_4263 0.24 +0.5 139,004 + Shewana3_4263 0.26 -0.5 139,125 + Shewana3_4263 0.45 +0.2 139,178 - Shewana3_4263 0.53 -1.2 139,196 - Shewana3_4263 0.56 +0.5 139,294 - Shewana3_4263 0.71 -1.5 139,322 + Shewana3_4263 0.76 -0.6 139,449 + -0.9 139,451 + +0.3 139,464 - -0.2 139,520 + -0.2 139,520 + -0.9 139,600 - +0.3 139,659 - -0.6 139,694 + Shewana3_4264 0.11 +0.1 139,780 - Shewana3_4264 0.16 +0.0 139,841 + Shewana3_4264 0.19 -0.0 139,844 - Shewana3_4264 0.19 -0.0 140,059 + Shewana3_4264 0.30 -0.5 140,143 - Shewana3_4264 0.35 -0.3 140,170 - Shewana3_4264 0.36 +0.6 140,265 - Shewana3_4264 0.41 -0.1 140,311 - Shewana3_4264 0.44 +2.7 140,398 + Shewana3_4264 0.48 -0.1
Or see this region's nucleotide sequence