Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4263

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4260 and Shewana3_4261 are separated by 9 nucleotidesShewana3_4261 and Shewana3_4262 are separated by 71 nucleotidesShewana3_4262 and Shewana3_4263 are separated by 225 nucleotidesShewana3_4263 and Shewana3_4264 are separated by 12 nucleotides Shewana3_4260: Shewana3_4260 - hypothetical protein (RefSeq), at 137,306 to 137,962 _4260 Shewana3_4261: Shewana3_4261 - hypothetical protein (RefSeq), at 137,972 to 138,256 _4261 Shewana3_4262: Shewana3_4262 - hypothetical protein (RefSeq), at 138,328 to 138,615 _4262 Shewana3_4263: Shewana3_4263 - hypothetical protein (RefSeq), at 138,841 to 139,476 _4263 Shewana3_4264: Shewana3_4264 - hypothetical protein (RefSeq), at 139,489 to 141,363 _4264 Position (kb) 138 139 140Strain fitness (log2 ratio) -2 -1 0 1 2at 137.936 kb on - strandat 138.011 kb on + strand, within Shewana3_4261at 138.036 kb on + strand, within Shewana3_4261at 138.181 kb on + strand, within Shewana3_4261at 138.833 kb on + strandat 138.839 kb on - strandat 138.889 kb on + strandat 138.964 kb on - strand, within Shewana3_4263at 138.987 kb on + strand, within Shewana3_4263at 138.995 kb on - strand, within Shewana3_4263at 138.995 kb on - strand, within Shewana3_4263at 138.995 kb on - strand, within Shewana3_4263at 139.004 kb on + strand, within Shewana3_4263at 139.125 kb on + strand, within Shewana3_4263at 139.178 kb on - strand, within Shewana3_4263at 139.196 kb on - strand, within Shewana3_4263at 139.294 kb on - strand, within Shewana3_4263at 139.322 kb on + strand, within Shewana3_4263at 139.449 kb on + strandat 139.451 kb on + strandat 139.464 kb on - strandat 139.520 kb on + strandat 139.520 kb on + strandat 139.600 kb on - strandat 139.659 kb on - strandat 139.694 kb on + strand, within Shewana3_4264at 139.780 kb on - strand, within Shewana3_4264at 139.841 kb on + strand, within Shewana3_4264at 139.844 kb on - strand, within Shewana3_4264at 140.059 kb on + strand, within Shewana3_4264at 140.143 kb on - strand, within Shewana3_4264at 140.170 kb on - strand, within Shewana3_4264at 140.265 kb on - strand, within Shewana3_4264at 140.311 kb on - strand, within Shewana3_4264at 140.398 kb on + strand, within Shewana3_4264

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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137,936 - +0.5
138,011 + Shewana3_4261 0.14 -0.1
138,036 + Shewana3_4261 0.22 -0.9
138,181 + Shewana3_4261 0.73 -0.0
138,833 + -0.0
138,839 - -0.9
138,889 + -0.7
138,964 - Shewana3_4263 0.19 -1.1
138,987 + Shewana3_4263 0.23 -2.2
138,995 - Shewana3_4263 0.24 -0.3
138,995 - Shewana3_4263 0.24 -1.5
138,995 - Shewana3_4263 0.24 +0.5
139,004 + Shewana3_4263 0.26 -0.5
139,125 + Shewana3_4263 0.45 +0.2
139,178 - Shewana3_4263 0.53 -1.2
139,196 - Shewana3_4263 0.56 +0.5
139,294 - Shewana3_4263 0.71 -1.5
139,322 + Shewana3_4263 0.76 -0.6
139,449 + -0.9
139,451 + +0.3
139,464 - -0.2
139,520 + -0.2
139,520 + -0.9
139,600 - +0.3
139,659 - -0.6
139,694 + Shewana3_4264 0.11 +0.1
139,780 - Shewana3_4264 0.16 +0.0
139,841 + Shewana3_4264 0.19 -0.0
139,844 - Shewana3_4264 0.19 -0.0
140,059 + Shewana3_4264 0.30 -0.5
140,143 - Shewana3_4264 0.35 -0.3
140,170 - Shewana3_4264 0.36 +0.6
140,265 - Shewana3_4264 0.41 -0.1
140,311 - Shewana3_4264 0.44 +2.7
140,398 + Shewana3_4264 0.48 -0.1

Or see this region's nucleotide sequence