Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4238

Experiment: Chloramphenicol 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0001 mg/ml
109,293	+		Shewana3_4236	0.58	+0.5
109,354	+		Shewana3_4236	0.72	+0.3
109,356	+		Shewana3_4236	0.72	-0.2
109,356	+		Shewana3_4236	0.72	+0.0
109,362	-		Shewana3_4236	0.74	-0.0
109,366	+		Shewana3_4236	0.75	-0.9
109,375	-		Shewana3_4236	0.77	+1.5
109,382	+		Shewana3_4236	0.78	-0.9
109,391	+		Shewana3_4236	0.80	+0.6
109,391	+		Shewana3_4236	0.80	+1.1
109,419	+		Shewana3_4236	0.87	+0.6
109,502	-				+1.9
109,655	-		Shewana3_4237	0.24	-0.3
109,738	+		Shewana3_4237	0.51	-1.7
109,738	+		Shewana3_4237	0.51	-0.7
109,777	+		Shewana3_4237	0.63	-0.5
109,785	-		Shewana3_4237	0.66	-0.1
109,785	-		Shewana3_4237	0.66	+0.2
109,789	+		Shewana3_4237	0.67	-1.4
109,877	+				-0.9
109,879	-				+0.2
109,899	-				-0.5
109,900	+				-0.8
109,900	+				+0.0
109,901	+				+0.1
109,908	-				+1.0
109,924	+				+0.4
109,960	-				+0.3
110,023	-				+0.8
110,023	-				+0.3
110,025	+				+0.1
110,033	-				+0.3
110,039	+				+0.2
110,039	+				+0.6
110,039	+				+0.7
110,039	+				+0.1
110,039	+				+0.6
110,039	+				-0.1
110,041	-				-0.9
110,047	-				+0.2
110,047	-				-0.1
110,061	-				+0.2
110,202	+				+0.2
110,212	+				-0.8
110,212	+				-0.7
110,212	+				-0.9
110,215	-				-0.1
110,215	-				-1.0
110,220	-				-0.4
110,223	+				-1.0
110,247	+				-1.1
110,255	-				+0.1
110,261	+				-0.5
110,267	+				-2.4
110,267	+				-0.9
110,267	+				+0.8
110,267	+				-0.3
110,267	+				-0.1
110,267	+				-0.4
110,267	+				-2.5
110,267	+				-0.5
110,267	+				-1.4
110,267	+				-0.7
110,267	+				-0.3
110,274	+				-0.5
110,275	-				+0.8
110,275	-				+0.7
110,275	-				+0.3
110,275	-				-0.1
110,275	-				+0.5
110,275	-				+0.4
110,275	-				+0.1
110,275	-				-0.3
110,275	-				+0.1
110,275	-				+0.2
110,275	-				+0.4
110,275	-				+1.3
110,275	-				-0.2
110,275	-				+0.5
110,282	-				+0.5
110,294	-				+0.7
110,312	-				+0.2
110,320	-				+0.1
110,341	-				+0.4
110,360	+				-1.1
110,365	+				+0.4
110,368	+				+0.0
110,410	-				+0.1
110,425	+				-0.5
110,425	+				+0.5
110,435	+				-0.7
110,499	+		Shewana3_4238	0.11	-0.6
110,499	+		Shewana3_4238	0.11	-0.5
110,507	-		Shewana3_4238	0.11	+0.2
110,536	-		Shewana3_4238	0.13	-0.3
110,558	-		Shewana3_4238	0.14	-0.1
110,606	-		Shewana3_4238	0.16	+0.4
110,636	-		Shewana3_4238	0.17	+0.5
110,647	+		Shewana3_4238	0.17	-2.4
110,655	-		Shewana3_4238	0.18	-1.0
110,656	-		Shewana3_4238	0.18	-1.2
110,661	-		Shewana3_4238	0.18	-0.4
110,670	-		Shewana3_4238	0.19	-0.4
110,671	-		Shewana3_4238	0.19	-0.2
110,698	+		Shewana3_4238	0.20	-0.1
110,706	-		Shewana3_4238	0.20	+0.3
110,707	+		Shewana3_4238	0.20	-0.9
110,744	+		Shewana3_4238	0.22	-2.1
110,784	-		Shewana3_4238	0.24	-0.8
110,789	-		Shewana3_4238	0.24	-0.7
110,789	-		Shewana3_4238	0.24	-0.6
110,797	-		Shewana3_4238	0.24	-0.8
110,797	-		Shewana3_4238	0.24	-1.2
110,797	-		Shewana3_4238	0.24	+0.0
110,799	+		Shewana3_4238	0.24	-1.0
110,813	+		Shewana3_4238	0.25	+0.7
110,820	+		Shewana3_4238	0.25	-0.9
110,828	-		Shewana3_4238	0.26	+0.1
110,828	-		Shewana3_4238	0.26	-1.9
110,847	+		Shewana3_4238	0.26	-1.5
110,863	-		Shewana3_4238	0.27	-1.7
110,866	-		Shewana3_4238	0.27	-0.4
110,887	+		Shewana3_4238	0.28	-2.0
110,895	-		Shewana3_4238	0.29	-0.8
110,906	+		Shewana3_4238	0.29	-0.4
110,926	+		Shewana3_4238	0.30	+1.9
110,934	-		Shewana3_4238	0.30	-0.8
110,934	-		Shewana3_4238	0.30	-1.2
110,938	+		Shewana3_4238	0.30	+0.3
110,938	+		Shewana3_4238	0.30	-0.5
110,946	-		Shewana3_4238	0.31	-2.0
110,966	+		Shewana3_4238	0.32	-0.9
110,998	-		Shewana3_4238	0.33	+0.9
111,006	+		Shewana3_4238	0.34	-0.2
111,006	+		Shewana3_4238	0.34	-0.5
111,014	-		Shewana3_4238	0.34	-0.1
111,016	+		Shewana3_4238	0.34	-1.4
111,016	+		Shewana3_4238	0.34	-0.5
111,024	-		Shewana3_4238	0.34	+0.3
111,024	-		Shewana3_4238	0.34	-1.5
111,024	-		Shewana3_4238	0.34	+0.5
111,024	-		Shewana3_4238	0.34	-0.4
111,024	-		Shewana3_4238	0.34	-1.5
111,024	-		Shewana3_4238	0.34	-0.9
111,024	-		Shewana3_4238	0.34	-1.4
111,024	-		Shewana3_4238	0.34	-0.2
111,032	+		Shewana3_4238	0.35	-0.7
111,032	+		Shewana3_4238	0.35	-0.1
111,050	-		Shewana3_4238	0.35	+1.0
111,081	-		Shewana3_4238	0.37	+0.1
111,081	-		Shewana3_4238	0.37	-0.5
111,115	+		Shewana3_4238	0.38	-0.5
111,116	-		Shewana3_4238	0.38	-0.1
111,116	-		Shewana3_4238	0.38	+0.5
111,116	-		Shewana3_4238	0.38	+0.7
111,142	+		Shewana3_4238	0.40	+0.1
111,193	+		Shewana3_4238	0.42	+0.3
111,224	-		Shewana3_4238	0.43	+1.0
111,224	-		Shewana3_4238	0.43	+0.9
111,237	-		Shewana3_4238	0.44	-0.1
111,321	-		Shewana3_4238	0.48	-1.2
111,326	+		Shewana3_4238	0.48	-1.6
111,334	-		Shewana3_4238	0.48	-1.1
111,359	+		Shewana3_4238	0.49	+0.9
111,367	-		Shewana3_4238	0.50	-0.5
111,402	+		Shewana3_4238	0.51	+0.5
111,402	+		Shewana3_4238	0.51	-0.9
111,458	+		Shewana3_4238	0.54	-0.2
111,466	-		Shewana3_4238	0.54	-0.7
111,466	-		Shewana3_4238	0.54	-0.1
111,492	-		Shewana3_4238	0.55	-1.0
111,492	-		Shewana3_4238	0.55	-0.7
111,492	-		Shewana3_4238	0.55	-0.1
111,494	+		Shewana3_4238	0.55	-0.2
111,494	+		Shewana3_4238	0.55	+1.5
111,494	+		Shewana3_4238	0.55	-0.7
111,494	+		Shewana3_4238	0.55	-0.6
111,502	-		Shewana3_4238	0.56	+0.1
111,502	-		Shewana3_4238	0.56	-0.7
111,502	-		Shewana3_4238	0.56	-0.3
111,502	-		Shewana3_4238	0.56	+0.4
111,514	+		Shewana3_4238	0.56	+1.5
111,514	+		Shewana3_4238	0.56	-0.4
111,514	+		Shewana3_4238	0.56	+0.5
111,514	+		Shewana3_4238	0.56	-2.5
111,522	-		Shewana3_4238	0.57	-1.6
111,522	-		Shewana3_4238	0.57	-0.1
111,522	-		Shewana3_4238	0.57	+0.5
111,522	-		Shewana3_4238	0.57	-0.1
111,522	-		Shewana3_4238	0.57	+0.5
111,522	-		Shewana3_4238	0.57	-1.1
111,527	-		Shewana3_4238	0.57	-0.5
111,589	-		Shewana3_4238	0.60	-1.4
111,591	-		Shewana3_4238	0.60	+0.5
111,599	-		Shewana3_4238	0.60	-2.9
111,599	-		Shewana3_4238	0.60	+0.5
111,599	-		Shewana3_4238	0.60	-1.5
111,599	-		Shewana3_4238	0.60	-1.0
111,601	+		Shewana3_4238	0.60	-2.3
111,618	+		Shewana3_4238	0.61	+0.0
111,618	+		Shewana3_4238	0.61	-0.9
111,618	+		Shewana3_4238	0.61	-2.6
111,618	+		Shewana3_4238	0.61	+0.3
111,618	+		Shewana3_4238	0.61	-0.6
111,618	+		Shewana3_4238	0.61	-1.0
111,618	+		Shewana3_4238	0.61	+1.5
111,626	-		Shewana3_4238	0.61	-1.1
111,626	-		Shewana3_4238	0.61	+0.6
111,626	-		Shewana3_4238	0.61	-1.2
111,626	-		Shewana3_4238	0.61	+0.1
111,626	-		Shewana3_4238	0.61	-0.8
111,626	-		Shewana3_4238	0.61	-1.1
111,626	-		Shewana3_4238	0.61	-1.0
111,626	-		Shewana3_4238	0.61	+0.2
111,626	-		Shewana3_4238	0.61	+0.5
111,626	-		Shewana3_4238	0.61	-1.0
111,626	-		Shewana3_4238	0.61	-1.5
111,626	-		Shewana3_4238	0.61	-1.5
111,626	-		Shewana3_4238	0.61	+1.5
111,626	-		Shewana3_4238	0.61	-0.8
111,626	-		Shewana3_4238	0.61	+0.5
111,626	-		Shewana3_4238	0.61	-0.9
111,626	-		Shewana3_4238	0.61	-0.3
111,626	-		Shewana3_4238	0.61	-0.7
111,628	+		Shewana3_4238	0.61	+0.8
111,628	+		Shewana3_4238	0.61	-0.1
111,628	+		Shewana3_4238	0.61	-0.0
111,628	+		Shewana3_4238	0.61	-1.5
111,636	-		Shewana3_4238	0.62	+0.2
111,636	-		Shewana3_4238	0.62	-1.8
111,636	-		Shewana3_4238	0.62	-0.5
111,636	-		Shewana3_4238	0.62	-1.4
111,636	-		Shewana3_4238	0.62	-0.8
111,636	-		Shewana3_4238	0.62	-0.4
111,759	-		Shewana3_4238	0.67	-0.1
111,765	+		Shewana3_4238	0.67	+1.2
111,765	+		Shewana3_4238	0.67	+0.2
111,768	+		Shewana3_4238	0.68	-1.1
111,787	+		Shewana3_4238	0.68	+0.9
111,859	+		Shewana3_4238	0.72	+0.3
111,867	-		Shewana3_4238	0.72	+0.6
111,868	-		Shewana3_4238	0.72	-0.5
111,872	-		Shewana3_4238	0.72	+0.2
111,878	+		Shewana3_4238	0.72	-2.7
111,884	-		Shewana3_4238	0.73	+0.4
111,888	+		Shewana3_4238	0.73	-2.0
111,888	+		Shewana3_4238	0.73	-1.4
111,896	-		Shewana3_4238	0.73	-0.1
111,896	-		Shewana3_4238	0.73	-0.5
111,897	-		Shewana3_4238	0.73	-0.2
111,898	-		Shewana3_4238	0.73	+1.5
111,905	-		Shewana3_4238	0.74	-0.9
111,918	-		Shewana3_4238	0.74	+0.2
111,965	-		Shewana3_4238	0.76	-1.5
111,974	+		Shewana3_4238	0.77	+0.5
112,028	+		Shewana3_4238	0.79	-0.5
112,036	-		Shewana3_4238	0.79	+0.6
112,036	-		Shewana3_4238	0.79	-0.1
112,086	+				-0.1
112,089	+		Shewana3_4238	0.82	-0.8
112,094	-		Shewana3_4238	0.82	-1.4
112,104	+		Shewana3_4238	0.83	-0.3
112,116	+		Shewana3_4238	0.83	+0.4
112,137	+		Shewana3_4238	0.84	-1.9
112,197	+		Shewana3_4238	0.87	+2.2
112,218	+		Shewana3_4238	0.88	+0.7
112,237	-		Shewana3_4238	0.88	+0.3
112,298	+				-0.9
112,342	-				-0.8
112,344	-				-0.3
112,403	-				-1.1
112,436	+				+0.2
112,452	-				-2.4
112,453	-				+0.5
112,503	-				+0.5
112,545	-				+0.4
112,599	-		Shewana3_4239	0.11	-0.1
112,766	+		Shewana3_4239	0.43	-0.7
112,784	+		Shewana3_4239	0.47	+0.1
112,807	+		Shewana3_4239	0.51	+0.7
112,948	-		Shewana3_4239	0.79	-1.1
112,949	-		Shewana3_4239	0.79	-0.1
112,970	+		Shewana3_4239	0.83	-0.5
112,970	+		Shewana3_4239	0.83	-0.7
112,970	+		Shewana3_4239	0.83	-0.1
112,970	+		Shewana3_4239	0.83	-1.7
112,975	+		Shewana3_4239	0.84	-0.9
112,978	-		Shewana3_4239	0.85	-0.2
112,978	-		Shewana3_4239	0.85	+0.3
112,978	-		Shewana3_4239	0.85	-0.1
112,993	-		Shewana3_4239	0.88	-0.2
113,025	-				-0.3
113,027	+				+0.5
113,188	-				+0.0
113,242	-				+0.5
113,317	+				-0.4
113,317	+				-0.5
113,317	+				-0.4
113,363	+				+0.4
113,363	+				+1.3
113,365	-				-0.3
113,365	-				-0.9
113,396	+				-0.7
113,406	-				-1.5
113,416	+				-1.5