Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4207 and Shewana3_4208 are separated by 68 nucleotides Shewana3_4208 and Shewana3_4209 overlap by 20 nucleotides Shewana3_4209 and Shewana3_4210 are separated by 74 nucleotides
Shewana3_4207: Shewana3_4207 - TraU family protein (RefSeq), at 75,580 to 76,659
_4207
Shewana3_4208: Shewana3_4208 - hypothetical protein (RefSeq), at 76,728 to 78,023
_4208
Shewana3_4209: Shewana3_4209 - Type IV secretory pathway protease TraF-like protein (RefSeq), at 78,004 to 78,510
_4209
Shewana3_4210: Shewana3_4210 - hypothetical protein (RefSeq), at 78,585 to 79,010
_4210
Position (kb) 76
77
78
79 Strain fitness (log2 ratio) -2
-1
0
1 at 75.841 kb on - strand, within Shewana3_4207 at 75.901 kb on + strand, within Shewana3_4207 at 75.908 kb on + strand, within Shewana3_4207 at 75.916 kb on - strand, within Shewana3_4207 at 76.424 kb on - strand, within Shewana3_4207 at 76.429 kb on - strand, within Shewana3_4207 at 76.598 kb on - strand at 76.788 kb on + strand at 76.792 kb on - strand at 76.827 kb on - strand at 76.957 kb on + strand, within Shewana3_4208 at 76.965 kb on - strand, within Shewana3_4208 at 77.078 kb on - strand, within Shewana3_4208 at 77.144 kb on - strand, within Shewana3_4208 at 77.185 kb on + strand, within Shewana3_4208 at 77.315 kb on + strand, within Shewana3_4208 at 77.342 kb on - strand, within Shewana3_4208 at 77.372 kb on + strand, within Shewana3_4208 at 77.401 kb on - strand, within Shewana3_4208 at 77.402 kb on - strand, within Shewana3_4208 at 77.417 kb on + strand, within Shewana3_4208 at 77.742 kb on - strand, within Shewana3_4208 at 77.851 kb on - strand, within Shewana3_4208 at 77.854 kb on - strand, within Shewana3_4208 at 77.856 kb on - strand, within Shewana3_4208 at 78.081 kb on + strand, within Shewana3_4209 at 78.081 kb on + strand, within Shewana3_4209 at 78.089 kb on - strand, within Shewana3_4209 at 78.120 kb on - strand, within Shewana3_4209 at 78.210 kb on + strand, within Shewana3_4209 at 78.210 kb on + strand, within Shewana3_4209 at 78.218 kb on - strand, within Shewana3_4209 at 78.316 kb on - strand, within Shewana3_4209 at 78.491 kb on + strand at 78.774 kb on + strand, within Shewana3_4210 at 78.900 kb on - strand, within Shewana3_4210 at 78.900 kb on - strand, within Shewana3_4210 at 79.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 75,841 - Shewana3_4207 0.24 -0.4 75,901 + Shewana3_4207 0.30 -0.7 75,908 + Shewana3_4207 0.30 -0.3 75,916 - Shewana3_4207 0.31 -0.9 76,424 - Shewana3_4207 0.78 -0.4 76,429 - Shewana3_4207 0.79 -2.4 76,598 - +1.6 76,788 + -1.9 76,792 - +0.0 76,827 - +0.7 76,957 + Shewana3_4208 0.18 -1.8 76,965 - Shewana3_4208 0.18 +0.8 77,078 - Shewana3_4208 0.27 +0.8 77,144 - Shewana3_4208 0.32 +0.3 77,185 + Shewana3_4208 0.35 +0.3 77,315 + Shewana3_4208 0.45 -0.1 77,342 - Shewana3_4208 0.47 -0.0 77,372 + Shewana3_4208 0.50 -0.4 77,401 - Shewana3_4208 0.52 -0.6 77,402 - Shewana3_4208 0.52 +1.0 77,417 + Shewana3_4208 0.53 +0.1 77,742 - Shewana3_4208 0.78 -0.2 77,851 - Shewana3_4208 0.87 +0.6 77,854 - Shewana3_4208 0.87 -0.2 77,856 - Shewana3_4208 0.87 +0.9 78,081 + Shewana3_4209 0.15 +0.2 78,081 + Shewana3_4209 0.15 +1.1 78,089 - Shewana3_4209 0.17 -0.5 78,120 - Shewana3_4209 0.23 +0.4 78,210 + Shewana3_4209 0.41 +0.5 78,210 + Shewana3_4209 0.41 -0.3 78,218 - Shewana3_4209 0.42 +0.3 78,316 - Shewana3_4209 0.62 +0.2 78,491 + +0.2 78,774 + Shewana3_4210 0.44 +0.2 78,900 - Shewana3_4210 0.74 -0.0 78,900 - Shewana3_4210 0.74 -0.5 79,020 - -0.1
Or see this region's nucleotide sequence