Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4205 and Shewana3_4206 are separated by 41 nucleotides Shewana3_4206 and Shewana3_4207 are separated by 2 nucleotides
Shewana3_4205: Shewana3_4205 - hypothetical protein (RefSeq), at 70,404 to 71,261
_4205
Shewana3_4206: Shewana3_4206 - hypothetical protein (RefSeq), at 71,303 to 75,577
_4206
Shewana3_4207: Shewana3_4207 - TraU family protein (RefSeq), at 75,580 to 76,659
_4207
Position (kb) 71
72
73
74
75
76 Strain fitness (log2 ratio) -2
-1
0
1 at 70.324 kb on - strand at 70.356 kb on + strand at 70.449 kb on + strand at 70.612 kb on - strand, within Shewana3_4205 at 70.689 kb on + strand, within Shewana3_4205 at 70.713 kb on - strand, within Shewana3_4205 at 70.762 kb on - strand, within Shewana3_4205 at 70.894 kb on - strand, within Shewana3_4205 at 70.951 kb on + strand, within Shewana3_4205 at 71.249 kb on + strand at 71.332 kb on + strand at 71.394 kb on - strand at 71.446 kb on - strand at 71.840 kb on + strand, within Shewana3_4206 at 71.925 kb on - strand, within Shewana3_4206 at 72.187 kb on - strand, within Shewana3_4206 at 72.308 kb on - strand, within Shewana3_4206 at 72.332 kb on - strand, within Shewana3_4206 at 72.402 kb on - strand, within Shewana3_4206 at 72.409 kb on + strand, within Shewana3_4206 at 72.432 kb on - strand, within Shewana3_4206 at 72.507 kb on + strand, within Shewana3_4206 at 72.525 kb on - strand, within Shewana3_4206 at 72.548 kb on - strand, within Shewana3_4206 at 72.877 kb on + strand, within Shewana3_4206 at 73.026 kb on + strand, within Shewana3_4206 at 73.078 kb on + strand, within Shewana3_4206 at 73.124 kb on + strand, within Shewana3_4206 at 73.161 kb on - strand, within Shewana3_4206 at 73.190 kb on - strand, within Shewana3_4206 at 73.227 kb on + strand, within Shewana3_4206 at 73.227 kb on + strand, within Shewana3_4206 at 73.237 kb on + strand, within Shewana3_4206 at 73.291 kb on + strand, within Shewana3_4206 at 73.291 kb on + strand, within Shewana3_4206 at 73.299 kb on - strand, within Shewana3_4206 at 73.299 kb on - strand, within Shewana3_4206 at 73.308 kb on + strand, within Shewana3_4206 at 73.577 kb on + strand, within Shewana3_4206 at 73.577 kb on + strand, within Shewana3_4206 at 73.608 kb on - strand, within Shewana3_4206 at 73.766 kb on - strand, within Shewana3_4206 at 73.792 kb on - strand, within Shewana3_4206 at 73.935 kb on + strand, within Shewana3_4206 at 73.968 kb on + strand, within Shewana3_4206 at 74.020 kb on + strand, within Shewana3_4206 at 74.076 kb on + strand, within Shewana3_4206 at 74.279 kb on - strand, within Shewana3_4206 at 74.281 kb on - strand, within Shewana3_4206 at 74.523 kb on - strand, within Shewana3_4206 at 74.523 kb on - strand, within Shewana3_4206 at 74.560 kb on + strand, within Shewana3_4206 at 74.560 kb on + strand, within Shewana3_4206 at 74.733 kb on + strand, within Shewana3_4206 at 74.840 kb on + strand, within Shewana3_4206 at 74.897 kb on - strand, within Shewana3_4206 at 75.036 kb on - strand, within Shewana3_4206 at 75.148 kb on - strand, within Shewana3_4206 at 75.204 kb on - strand at 75.277 kb on - strand at 75.676 kb on - strand at 75.841 kb on - strand, within Shewana3_4207 at 75.901 kb on + strand, within Shewana3_4207 at 75.908 kb on + strand, within Shewana3_4207 at 75.916 kb on - strand, within Shewana3_4207 at 76.424 kb on - strand, within Shewana3_4207 at 76.429 kb on - strand, within Shewana3_4207
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 70,324 - +0.0 70,356 + +0.7 70,449 + +0.8 70,612 - Shewana3_4205 0.24 +0.5 70,689 + Shewana3_4205 0.33 +0.9 70,713 - Shewana3_4205 0.36 -1.5 70,762 - Shewana3_4205 0.42 -0.0 70,894 - Shewana3_4205 0.57 -0.1 70,951 + Shewana3_4205 0.64 -0.5 71,249 + +0.7 71,332 + -1.1 71,394 - +0.7 71,446 - +0.2 71,840 + Shewana3_4206 0.13 -0.8 71,925 - Shewana3_4206 0.15 +0.3 72,187 - Shewana3_4206 0.21 +0.9 72,308 - Shewana3_4206 0.24 +0.2 72,332 - Shewana3_4206 0.24 +0.3 72,402 - Shewana3_4206 0.26 +0.3 72,409 + Shewana3_4206 0.26 -1.8 72,432 - Shewana3_4206 0.26 +0.8 72,507 + Shewana3_4206 0.28 +0.8 72,525 - Shewana3_4206 0.29 +0.6 72,548 - Shewana3_4206 0.29 +0.8 72,877 + Shewana3_4206 0.37 -1.4 73,026 + Shewana3_4206 0.40 -0.7 73,078 + Shewana3_4206 0.42 +0.3 73,124 + Shewana3_4206 0.43 -0.3 73,161 - Shewana3_4206 0.43 +0.3 73,190 - Shewana3_4206 0.44 -0.3 73,227 + Shewana3_4206 0.45 -2.2 73,227 + Shewana3_4206 0.45 -1.0 73,237 + Shewana3_4206 0.45 -0.1 73,291 + Shewana3_4206 0.47 +0.2 73,291 + Shewana3_4206 0.47 -1.1 73,299 - Shewana3_4206 0.47 -0.5 73,299 - Shewana3_4206 0.47 +0.1 73,308 + Shewana3_4206 0.47 +1.5 73,577 + Shewana3_4206 0.53 -1.9 73,577 + Shewana3_4206 0.53 +0.5 73,608 - Shewana3_4206 0.54 +1.5 73,766 - Shewana3_4206 0.58 +0.9 73,792 - Shewana3_4206 0.58 +0.2 73,935 + Shewana3_4206 0.62 -2.5 73,968 + Shewana3_4206 0.62 +0.9 74,020 + Shewana3_4206 0.64 -0.4 74,076 + Shewana3_4206 0.65 -0.9 74,279 - Shewana3_4206 0.70 -0.1 74,281 - Shewana3_4206 0.70 +0.7 74,523 - Shewana3_4206 0.75 +0.7 74,523 - Shewana3_4206 0.75 -0.0 74,560 + Shewana3_4206 0.76 +0.5 74,560 + Shewana3_4206 0.76 +0.1 74,733 + Shewana3_4206 0.80 +1.1 74,840 + Shewana3_4206 0.83 -0.4 74,897 - Shewana3_4206 0.84 +0.4 75,036 - Shewana3_4206 0.87 -0.1 75,148 - Shewana3_4206 0.90 -0.9 75,204 - -0.8 75,277 - -1.7 75,676 - +0.6 75,841 - Shewana3_4207 0.24 -0.4 75,901 + Shewana3_4207 0.30 -0.7 75,908 + Shewana3_4207 0.30 -0.3 75,916 - Shewana3_4207 0.31 -0.9 76,424 - Shewana3_4207 0.78 -0.4 76,429 - Shewana3_4207 0.79 -2.4
Or see this region's nucleotide sequence