Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4199 and Shewana3_4200 are separated by 189 nucleotides Shewana3_4200 and Shewana3_4201 are separated by 223 nucleotides
Shewana3_4199: Shewana3_4199 - hypothetical protein (RefSeq), at 61,082 to 62,101
_4199
Shewana3_4200: Shewana3_4200 - hypothetical protein (RefSeq), at 62,291 to 63,763
_4200
Shewana3_4201: Shewana3_4201 - ATPase (RefSeq), at 63,987 to 64,961
_4201
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 61.299 kb on + strand, within Shewana3_4199 at 61.618 kb on + strand, within Shewana3_4199 at 61.618 kb on + strand, within Shewana3_4199 at 61.618 kb on + strand, within Shewana3_4199 at 61.626 kb on - strand, within Shewana3_4199 at 61.626 kb on - strand, within Shewana3_4199 at 61.626 kb on - strand, within Shewana3_4199 at 61.643 kb on - strand, within Shewana3_4199 at 61.662 kb on - strand, within Shewana3_4199 at 61.662 kb on - strand, within Shewana3_4199 at 62.017 kb on - strand at 62.104 kb on - strand at 62.149 kb on - strand at 62.288 kb on - strand at 62.352 kb on - strand at 62.472 kb on - strand, within Shewana3_4200 at 62.589 kb on - strand, within Shewana3_4200 at 62.589 kb on - strand, within Shewana3_4200 at 62.599 kb on - strand, within Shewana3_4200 at 62.990 kb on + strand, within Shewana3_4200 at 63.011 kb on + strand, within Shewana3_4200 at 63.011 kb on + strand, within Shewana3_4200 at 63.029 kb on - strand, within Shewana3_4200 at 63.029 kb on - strand, within Shewana3_4200 at 63.090 kb on + strand, within Shewana3_4200 at 63.154 kb on - strand, within Shewana3_4200 at 63.169 kb on + strand, within Shewana3_4200 at 63.237 kb on + strand, within Shewana3_4200 at 63.266 kb on + strand, within Shewana3_4200 at 63.273 kb on + strand, within Shewana3_4200 at 63.370 kb on + strand, within Shewana3_4200 at 63.370 kb on + strand, within Shewana3_4200 at 63.370 kb on + strand, within Shewana3_4200 at 63.370 kb on + strand, within Shewana3_4200 at 63.370 kb on + strand, within Shewana3_4200 at 63.370 kb on + strand, within Shewana3_4200 at 63.378 kb on - strand, within Shewana3_4200 at 63.453 kb on - strand, within Shewana3_4200 at 63.678 kb on + strand at 63.678 kb on + strand at 63.686 kb on - strand at 63.686 kb on - strand at 63.843 kb on + strand at 63.843 kb on - strand at 63.956 kb on - strand at 63.970 kb on - strand at 64.011 kb on - strand at 64.049 kb on - strand at 64.073 kb on - strand at 64.281 kb on - strand, within Shewana3_4201 at 64.543 kb on - strand, within Shewana3_4201 at 64.591 kb on + strand, within Shewana3_4201 at 64.599 kb on - strand, within Shewana3_4201 at 64.690 kb on - strand, within Shewana3_4201 at 64.700 kb on - strand, within Shewana3_4201
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 61,299 + Shewana3_4199 0.21 -0.7 61,618 + Shewana3_4199 0.53 -1.3 61,618 + Shewana3_4199 0.53 -0.2 61,618 + Shewana3_4199 0.53 -0.9 61,626 - Shewana3_4199 0.53 -0.0 61,626 - Shewana3_4199 0.53 +0.3 61,626 - Shewana3_4199 0.53 +0.6 61,643 - Shewana3_4199 0.55 +0.1 61,662 - Shewana3_4199 0.57 +0.0 61,662 - Shewana3_4199 0.57 +0.2 62,017 - +0.2 62,104 - -0.0 62,149 - -0.3 62,288 - +0.6 62,352 - +0.3 62,472 - Shewana3_4200 0.12 +0.2 62,589 - Shewana3_4200 0.20 +0.5 62,589 - Shewana3_4200 0.20 +0.8 62,599 - Shewana3_4200 0.21 +0.3 62,990 + Shewana3_4200 0.47 -0.1 63,011 + Shewana3_4200 0.49 -0.1 63,011 + Shewana3_4200 0.49 -1.1 63,029 - Shewana3_4200 0.50 +1.0 63,029 - Shewana3_4200 0.50 +0.1 63,090 + Shewana3_4200 0.54 -1.5 63,154 - Shewana3_4200 0.59 +0.8 63,169 + Shewana3_4200 0.60 +1.5 63,237 + Shewana3_4200 0.64 -2.9 63,266 + Shewana3_4200 0.66 -1.5 63,273 + Shewana3_4200 0.67 -1.7 63,370 + Shewana3_4200 0.73 -0.2 63,370 + Shewana3_4200 0.73 +0.3 63,370 + Shewana3_4200 0.73 +0.1 63,370 + Shewana3_4200 0.73 +0.1 63,370 + Shewana3_4200 0.73 +0.1 63,370 + Shewana3_4200 0.73 +0.6 63,378 - Shewana3_4200 0.74 -0.7 63,453 - Shewana3_4200 0.79 +0.6 63,678 + -0.1 63,678 + -0.3 63,686 - +0.4 63,686 - -0.2 63,843 + +0.6 63,843 - +0.6 63,956 - +0.7 63,970 - +0.6 64,011 - +0.2 64,049 - +0.5 64,073 - +0.5 64,281 - Shewana3_4201 0.30 +0.9 64,543 - Shewana3_4201 0.57 +0.5 64,591 + Shewana3_4201 0.62 -1.1 64,599 - Shewana3_4201 0.63 +0.6 64,690 - Shewana3_4201 0.72 +0.4 64,700 - Shewana3_4201 0.73 -0.0
Or see this region's nucleotide sequence