Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4192 and Shewana3_4193 are separated by 130 nucleotides Shewana3_4193 and Shewana3_4194 are separated by 93 nucleotides
Shewana3_4192: Shewana3_4192 - hypothetical protein (RefSeq), at 55,345 to 55,773
_4192
Shewana3_4193: Shewana3_4193 - hypothetical protein (RefSeq), at 55,904 to 56,452
_4193
Shewana3_4194: Shewana3_4194 - C-5 cytosine-specific DNA methylase (RefSeq), at 56,546 to 57,919
_4194
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1 at 54.938 kb on - strand at 55.342 kb on - strand at 55.381 kb on + strand at 55.404 kb on + strand, within Shewana3_4192 at 55.412 kb on - strand, within Shewana3_4192 at 55.851 kb on - strand at 56.032 kb on + strand, within Shewana3_4193 at 56.175 kb on + strand, within Shewana3_4193 at 56.229 kb on - strand, within Shewana3_4193 at 56.239 kb on - strand, within Shewana3_4193 at 56.270 kb on + strand, within Shewana3_4193 at 56.273 kb on - strand, within Shewana3_4193 at 56.278 kb on - strand, within Shewana3_4193 at 56.358 kb on - strand, within Shewana3_4193 at 56.538 kb on - strand at 56.770 kb on + strand, within Shewana3_4194 at 56.778 kb on - strand, within Shewana3_4194 at 56.783 kb on - strand, within Shewana3_4194 at 56.795 kb on + strand, within Shewana3_4194 at 56.852 kb on + strand, within Shewana3_4194 at 56.905 kb on + strand, within Shewana3_4194 at 56.913 kb on - strand, within Shewana3_4194 at 56.947 kb on + strand, within Shewana3_4194 at 56.955 kb on - strand, within Shewana3_4194 at 56.991 kb on - strand, within Shewana3_4194 at 57.115 kb on + strand, within Shewana3_4194 at 57.118 kb on - strand, within Shewana3_4194 at 57.120 kb on + strand, within Shewana3_4194 at 57.120 kb on + strand, within Shewana3_4194 at 57.146 kb on - strand, within Shewana3_4194 at 57.221 kb on + strand, within Shewana3_4194 at 57.400 kb on + strand, within Shewana3_4194 at 57.408 kb on - strand, within Shewana3_4194
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 54,938 - +0.4 55,342 - +0.9 55,381 + -0.3 55,404 + Shewana3_4192 0.14 -2.1 55,412 - Shewana3_4192 0.16 +0.0 55,851 - -0.0 56,032 + Shewana3_4193 0.23 +0.2 56,175 + Shewana3_4193 0.49 +0.1 56,229 - Shewana3_4193 0.59 +0.0 56,239 - Shewana3_4193 0.61 +1.3 56,270 + Shewana3_4193 0.67 -0.3 56,273 - Shewana3_4193 0.67 +0.4 56,278 - Shewana3_4193 0.68 +0.7 56,358 - Shewana3_4193 0.83 +0.3 56,538 - -0.7 56,770 + Shewana3_4194 0.16 -0.7 56,778 - Shewana3_4194 0.17 +0.3 56,783 - Shewana3_4194 0.17 +0.2 56,795 + Shewana3_4194 0.18 -0.0 56,852 + Shewana3_4194 0.22 -1.0 56,905 + Shewana3_4194 0.26 -0.7 56,913 - Shewana3_4194 0.27 +0.5 56,947 + Shewana3_4194 0.29 -1.6 56,955 - Shewana3_4194 0.30 +0.5 56,991 - Shewana3_4194 0.32 +0.7 57,115 + Shewana3_4194 0.41 +0.5 57,118 - Shewana3_4194 0.42 +0.7 57,120 + Shewana3_4194 0.42 +0.4 57,120 + Shewana3_4194 0.42 -0.1 57,146 - Shewana3_4194 0.44 +0.7 57,221 + Shewana3_4194 0.49 +0.0 57,400 + Shewana3_4194 0.62 -0.5 57,408 - Shewana3_4194 0.63 -2.1
Or see this region's nucleotide sequence