Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4189

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4188 and Shewana3_4189 are separated by 66 nucleotidesShewana3_4189 and Shewana3_4190 are separated by 91 nucleotidesShewana3_4190 and Shewana3_4191 are separated by 71 nucleotides Shewana3_4188: Shewana3_4188 - hypothetical protein (RefSeq), at 52,776 to 53,429 _4188 Shewana3_4189: Shewana3_4189 - hypothetical protein (RefSeq), at 53,496 to 54,005 _4189 Shewana3_4190: Shewana3_4190 - hypothetical protein (RefSeq), at 54,097 to 54,537 _4190 Shewana3_4191: Shewana3_4191 - ferredoxin (RefSeq), at 54,609 to 54,833 _4191 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1at 52.529 kb on + strandat 52.821 kb on + strandat 52.827 kb on + strandat 52.835 kb on - strandat 52.839 kb on + strandat 52.858 kb on + strand, within Shewana3_4188at 52.891 kb on + strand, within Shewana3_4188at 52.899 kb on - strand, within Shewana3_4188at 52.899 kb on - strand, within Shewana3_4188at 52.901 kb on + strand, within Shewana3_4188at 53.020 kb on - strand, within Shewana3_4188at 53.020 kb on - strand, within Shewana3_4188at 53.039 kb on - strand, within Shewana3_4188at 53.150 kb on + strand, within Shewana3_4188at 53.158 kb on - strand, within Shewana3_4188at 53.158 kb on - strand, within Shewana3_4188at 53.175 kb on + strand, within Shewana3_4188at 53.299 kb on - strand, within Shewana3_4188at 53.494 kb on - strandat 53.502 kb on - strandat 53.504 kb on + strandat 53.601 kb on + strand, within Shewana3_4189at 53.606 kb on - strand, within Shewana3_4189at 53.606 kb on - strand, within Shewana3_4189at 53.652 kb on - strand, within Shewana3_4189at 53.812 kb on - strand, within Shewana3_4189at 53.814 kb on + strand, within Shewana3_4189at 53.815 kb on - strand, within Shewana3_4189at 53.820 kb on - strand, within Shewana3_4189at 53.822 kb on - strand, within Shewana3_4189at 53.939 kb on - strand, within Shewana3_4189at 53.953 kb on - strand, within Shewana3_4189at 54.038 kb on + strandat 54.038 kb on + strandat 54.039 kb on + strandat 54.039 kb on + strandat 54.039 kb on + strandat 54.039 kb on + strandat 54.046 kb on - strandat 54.046 kb on - strandat 54.046 kb on - strandat 54.046 kb on - strandat 54.046 kb on - strandat 54.054 kb on + strandat 54.062 kb on - strandat 54.168 kb on - strand, within Shewana3_4190at 54.189 kb on - strand, within Shewana3_4190at 54.193 kb on - strand, within Shewana3_4190at 54.240 kb on + strand, within Shewana3_4190at 54.248 kb on - strand, within Shewana3_4190at 54.267 kb on + strand, within Shewana3_4190at 54.267 kb on + strand, within Shewana3_4190at 54.275 kb on - strand, within Shewana3_4190at 54.275 kb on - strand, within Shewana3_4190at 54.282 kb on + strand, within Shewana3_4190at 54.483 kb on + strand, within Shewana3_4190at 54.483 kb on + strand, within Shewana3_4190at 54.483 kb on + strand, within Shewana3_4190at 54.546 kb on + strandat 54.547 kb on - strandat 54.598 kb on - strandat 54.663 kb on - strand, within Shewana3_4191at 54.682 kb on + strand, within Shewana3_4191at 54.714 kb on - strand, within Shewana3_4191at 54.724 kb on - strand, within Shewana3_4191at 54.842 kb on - strandat 54.872 kb on + strandat 54.938 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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52,529 + +0.8
52,821 + -0.1
52,827 + -0.1
52,835 - -1.1
52,839 + -0.1
52,858 + Shewana3_4188 0.13 -1.1
52,891 + Shewana3_4188 0.18 -1.8
52,899 - Shewana3_4188 0.19 -0.1
52,899 - Shewana3_4188 0.19 -1.1
52,901 + Shewana3_4188 0.19 +0.5
53,020 - Shewana3_4188 0.37 -0.1
53,020 - Shewana3_4188 0.37 -0.1
53,039 - Shewana3_4188 0.40 +0.0
53,150 + Shewana3_4188 0.57 +0.2
53,158 - Shewana3_4188 0.58 +0.0
53,158 - Shewana3_4188 0.58 -0.5
53,175 + Shewana3_4188 0.61 +0.5
53,299 - Shewana3_4188 0.80 +0.3
53,494 - +0.2
53,502 - +0.7
53,504 + -1.4
53,601 + Shewana3_4189 0.21 -1.5
53,606 - Shewana3_4189 0.22 +0.6
53,606 - Shewana3_4189 0.22 +0.3
53,652 - Shewana3_4189 0.31 +0.6
53,812 - Shewana3_4189 0.62 +0.4
53,814 + Shewana3_4189 0.62 -1.1
53,815 - Shewana3_4189 0.63 +0.2
53,820 - Shewana3_4189 0.64 +0.5
53,822 - Shewana3_4189 0.64 +0.4
53,939 - Shewana3_4189 0.87 +0.1
53,953 - Shewana3_4189 0.90 +0.8
54,038 + -0.1
54,038 + +0.3
54,039 + +0.8
54,039 + -0.6
54,039 + +0.0
54,039 + -0.0
54,046 - -0.4
54,046 - +0.9
54,046 - +0.6
54,046 - +0.2
54,046 - +0.2
54,054 + -1.1
54,062 - +0.4
54,168 - Shewana3_4190 0.16 +0.7
54,189 - Shewana3_4190 0.21 +0.5
54,193 - Shewana3_4190 0.22 +0.5
54,240 + Shewana3_4190 0.32 -0.2
54,248 - Shewana3_4190 0.34 +0.1
54,267 + Shewana3_4190 0.39 +0.1
54,267 + Shewana3_4190 0.39 -1.9
54,275 - Shewana3_4190 0.40 +0.0
54,275 - Shewana3_4190 0.40 -0.0
54,282 + Shewana3_4190 0.42 -0.6
54,483 + Shewana3_4190 0.88 +0.4
54,483 + Shewana3_4190 0.88 +1.0
54,483 + Shewana3_4190 0.88 -0.1
54,546 + +0.0
54,547 - +0.2
54,598 - +1.0
54,663 - Shewana3_4191 0.24 +0.4
54,682 + Shewana3_4191 0.32 -0.3
54,714 - Shewana3_4191 0.47 +0.6
54,724 - Shewana3_4191 0.51 +0.1
54,842 - +1.2
54,872 + -0.4
54,938 - +0.4

Or see this region's nucleotide sequence