Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4170 and Shewana3_4171 are separated by 82 nucleotides Shewana3_4171 and Shewana3_4172 are separated by 580 nucleotides
Shewana3_4170: Shewana3_4170 - hypothetical protein (RefSeq), at 35,699 to 36,355
_4170
Shewana3_4171: Shewana3_4171 - hypothetical protein (RefSeq), at 36,438 to 37,784
_4171
Shewana3_4172: Shewana3_4172 - DNA-directed DNA polymerase (RefSeq), at 38,365 to 39,615
_4172
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 35.536 kb on - strand at 35.575 kb on - strand at 35.634 kb on - strand at 35.645 kb on + strand at 35.645 kb on + strand at 35.645 kb on + strand at 35.653 kb on - strand at 35.728 kb on - strand at 35.741 kb on + strand at 35.874 kb on + strand, within Shewana3_4170 at 35.917 kb on - strand, within Shewana3_4170 at 35.936 kb on - strand, within Shewana3_4170 at 35.950 kb on + strand, within Shewana3_4170 at 35.996 kb on - strand, within Shewana3_4170 at 36.014 kb on + strand, within Shewana3_4170 at 36.074 kb on - strand, within Shewana3_4170 at 36.188 kb on + strand, within Shewana3_4170 at 36.188 kb on + strand, within Shewana3_4170 at 36.191 kb on - strand, within Shewana3_4170 at 36.231 kb on + strand, within Shewana3_4170 at 36.266 kb on - strand, within Shewana3_4170 at 36.269 kb on + strand, within Shewana3_4170 at 36.287 kb on + strand, within Shewana3_4170 at 36.508 kb on - strand at 36.556 kb on - strand at 36.622 kb on + strand, within Shewana3_4171 at 36.690 kb on + strand, within Shewana3_4171 at 36.778 kb on + strand, within Shewana3_4171 at 36.874 kb on + strand, within Shewana3_4171 at 36.911 kb on - strand, within Shewana3_4171 at 37.157 kb on - strand, within Shewana3_4171 at 37.220 kb on + strand, within Shewana3_4171 at 37.255 kb on - strand, within Shewana3_4171 at 37.303 kb on + strand, within Shewana3_4171 at 37.305 kb on - strand, within Shewana3_4171 at 37.343 kb on + strand, within Shewana3_4171 at 37.397 kb on - strand, within Shewana3_4171 at 37.583 kb on + strand, within Shewana3_4171 at 37.664 kb on - strand at 37.703 kb on - strand at 37.856 kb on + strand at 37.871 kb on + strand at 37.871 kb on + strand at 37.879 kb on - strand at 37.879 kb on - strand at 37.879 kb on - strand at 37.898 kb on - strand at 37.956 kb on - strand at 37.956 kb on - strand at 37.956 kb on - strand at 38.031 kb on + strand at 38.093 kb on + strand at 38.106 kb on - strand at 38.117 kb on - strand at 38.122 kb on - strand at 38.140 kb on + strand at 38.335 kb on + strand at 38.478 kb on - strand at 38.528 kb on - strand, within Shewana3_4172 at 38.557 kb on - strand, within Shewana3_4172 at 38.602 kb on + strand, within Shewana3_4172
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 35,536 - -2.0 35,575 - -0.2 35,634 - +0.8 35,645 + -0.2 35,645 + +0.7 35,645 + -0.4 35,653 - -0.2 35,728 - +0.1 35,741 + -0.2 35,874 + Shewana3_4170 0.27 +0.4 35,917 - Shewana3_4170 0.33 -0.5 35,936 - Shewana3_4170 0.36 -0.3 35,950 + Shewana3_4170 0.38 -0.2 35,996 - Shewana3_4170 0.45 -1.9 36,014 + Shewana3_4170 0.48 -1.1 36,074 - Shewana3_4170 0.57 -0.5 36,188 + Shewana3_4170 0.74 -1.1 36,188 + Shewana3_4170 0.74 -0.5 36,191 - Shewana3_4170 0.75 +0.7 36,231 + Shewana3_4170 0.81 -1.4 36,266 - Shewana3_4170 0.86 -1.9 36,269 + Shewana3_4170 0.87 -0.9 36,287 + Shewana3_4170 0.89 -1.3 36,508 - -0.7 36,556 - -0.6 36,622 + Shewana3_4171 0.14 -1.0 36,690 + Shewana3_4171 0.19 -1.2 36,778 + Shewana3_4171 0.25 -1.2 36,874 + Shewana3_4171 0.32 -1.0 36,911 - Shewana3_4171 0.35 -1.2 37,157 - Shewana3_4171 0.53 -0.4 37,220 + Shewana3_4171 0.58 -1.1 37,255 - Shewana3_4171 0.61 +0.2 37,303 + Shewana3_4171 0.64 -1.1 37,305 - Shewana3_4171 0.64 +0.0 37,343 + Shewana3_4171 0.67 -0.2 37,397 - Shewana3_4171 0.71 +0.5 37,583 + Shewana3_4171 0.85 -1.9 37,664 - -0.1 37,703 - +0.5 37,856 + +0.0 37,871 + -0.3 37,871 + +0.5 37,879 - +0.5 37,879 - +0.2 37,879 - -0.7 37,898 - -0.6 37,956 - +0.1 37,956 - -0.1 37,956 - +0.1 38,031 + +0.9 38,093 + -1.2 38,106 - +0.3 38,117 - -0.5 38,122 - -0.5 38,140 + +0.5 38,335 + -1.8 38,478 - -1.4 38,528 - Shewana3_4172 0.13 +1.5 38,557 - Shewana3_4172 0.15 +0.5 38,602 + Shewana3_4172 0.19 -3.4
Or see this region's nucleotide sequence