Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4163 and Shewana3_4164 are separated by 171 nucleotides Shewana3_4164 and Shewana3_4165 are separated by 428 nucleotides Shewana3_4165 and Shewana3_4166 are separated by 29 nucleotides
Shewana3_4163: Shewana3_4163 - restriction modification system DNA specificity subunit (RefSeq), at 25,917 to 27,134
_4163
Shewana3_4164: Shewana3_4164 - HsdR family type I site-specific deoxyribonuclease (RefSeq), at 27,306 to 30,536
_4164
Shewana3_4165: Shewana3_4165 - hypothetical protein (RefSeq), at 30,965 to 31,375
_4165
Shewana3_4166: Shewana3_4166 - hypothetical protein (RefSeq), at 31,405 to 32,007
_4166
Position (kb)
27
28
29
30
31 Strain fitness (log2 ratio)
-2
-1
0
1 at 26.566 kb on - strand, within Shewana3_4163 at 26.583 kb on + strand, within Shewana3_4163 at 26.590 kb on + strand, within Shewana3_4163 at 26.590 kb on + strand, within Shewana3_4163 at 26.598 kb on - strand, within Shewana3_4163 at 26.598 kb on - strand, within Shewana3_4163 at 26.632 kb on - strand, within Shewana3_4163 at 26.802 kb on + strand, within Shewana3_4163 at 26.802 kb on + strand, within Shewana3_4163 at 27.010 kb on + strand, within Shewana3_4163 at 27.582 kb on - strand at 27.860 kb on + strand, within Shewana3_4164 at 27.911 kb on - strand, within Shewana3_4164 at 28.017 kb on + strand, within Shewana3_4164 at 28.025 kb on - strand, within Shewana3_4164 at 28.052 kb on + strand, within Shewana3_4164 at 28.060 kb on - strand, within Shewana3_4164 at 28.756 kb on + strand, within Shewana3_4164 at 28.756 kb on + strand, within Shewana3_4164 at 28.937 kb on - strand, within Shewana3_4164 at 29.194 kb on + strand, within Shewana3_4164 at 29.195 kb on + strand, within Shewana3_4164 at 29.477 kb on - strand, within Shewana3_4164 at 29.506 kb on - strand, within Shewana3_4164 at 29.640 kb on - strand, within Shewana3_4164 at 29.709 kb on + strand, within Shewana3_4164 at 29.715 kb on - strand, within Shewana3_4164 at 29.774 kb on + strand, within Shewana3_4164 at 29.830 kb on - strand, within Shewana3_4164 at 29.898 kb on - strand, within Shewana3_4164 at 29.900 kb on + strand, within Shewana3_4164 at 30.002 kb on + strand, within Shewana3_4164 at 30.005 kb on - strand, within Shewana3_4164 at 30.122 kb on + strand, within Shewana3_4164 at 30.259 kb on - strand at 30.278 kb on - strand at 30.285 kb on - strand at 30.319 kb on - strand at 30.380 kb on - strand at 30.594 kb on - strand at 30.633 kb on + strand at 30.661 kb on - strand at 30.684 kb on - strand at 30.846 kb on + strand at 30.846 kb on + strand at 30.854 kb on - strand at 31.205 kb on + strand, within Shewana3_4165 at 31.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 26,566 - Shewana3_4163 0.53 -0.9 26,583 + Shewana3_4163 0.55 -0.8 26,590 + Shewana3_4163 0.55 -1.5 26,590 + Shewana3_4163 0.55 -0.2 26,598 - Shewana3_4163 0.56 -1.1 26,598 - Shewana3_4163 0.56 -0.5 26,632 - Shewana3_4163 0.59 -2.1 26,802 + Shewana3_4163 0.73 -0.9 26,802 + Shewana3_4163 0.73 -0.9 27,010 + Shewana3_4163 0.90 -1.7 27,582 - -0.1 27,860 + Shewana3_4164 0.17 -0.3 27,911 - Shewana3_4164 0.19 -0.1 28,017 + Shewana3_4164 0.22 -0.7 28,025 - Shewana3_4164 0.22 -0.8 28,052 + Shewana3_4164 0.23 +0.2 28,060 - Shewana3_4164 0.23 -0.8 28,756 + Shewana3_4164 0.45 +0.8 28,756 + Shewana3_4164 0.45 -0.4 28,937 - Shewana3_4164 0.50 -2.2 29,194 + Shewana3_4164 0.58 -2.4 29,195 + Shewana3_4164 0.58 -1.4 29,477 - Shewana3_4164 0.67 -0.5 29,506 - Shewana3_4164 0.68 +1.5 29,640 - Shewana3_4164 0.72 -2.5 29,709 + Shewana3_4164 0.74 -0.2 29,715 - Shewana3_4164 0.75 +1.5 29,774 + Shewana3_4164 0.76 -0.6 29,830 - Shewana3_4164 0.78 -1.1 29,898 - Shewana3_4164 0.80 -0.1 29,900 + Shewana3_4164 0.80 -1.4 30,002 + Shewana3_4164 0.83 -1.1 30,005 - Shewana3_4164 0.84 +0.2 30,122 + Shewana3_4164 0.87 -1.4 30,259 - -0.9 30,278 - +0.5 30,285 - -2.4 30,319 - +0.5 30,380 - +0.2 30,594 - -0.9 30,633 + -0.6 30,661 - +1.0 30,684 - -1.1 30,846 + -1.5 30,846 + -1.1 30,854 - -0.7 31,205 + Shewana3_4165 0.58 +0.1 31,369 - +0.3
Or see this region's nucleotide sequence