Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4163

Experiment: Chloramphenicol 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_4162 and Shewana3_4163 are separated by 1 nucleotidesShewana3_4163 and Shewana3_4164 are separated by 171 nucleotides Shewana3_4162: Shewana3_4162 - type I restriction-modification system, M subunit (RefSeq), at 23,291 to 25,915 _4162 Shewana3_4163: Shewana3_4163 - restriction modification system DNA specificity subunit (RefSeq), at 25,917 to 27,134 _4163 Shewana3_4164: Shewana3_4164 - HsdR family type I site-specific deoxyribonuclease (RefSeq), at 27,306 to 30,536 _4164 Position (kb) 25 26 27 28Strain fitness (log2 ratio) -2 -1 0 1 2at 25.016 kb on + strand, within Shewana3_4162at 25.082 kb on + strand, within Shewana3_4162at 25.090 kb on - strand, within Shewana3_4162at 25.090 kb on - strand, within Shewana3_4162at 25.100 kb on - strand, within Shewana3_4162at 25.137 kb on + strand, within Shewana3_4162at 25.178 kb on + strand, within Shewana3_4162at 25.202 kb on - strand, within Shewana3_4162at 25.285 kb on - strand, within Shewana3_4162at 25.412 kb on + strand, within Shewana3_4162at 25.420 kb on - strand, within Shewana3_4162at 25.420 kb on - strand, within Shewana3_4162at 25.420 kb on - strand, within Shewana3_4162at 25.420 kb on - strand, within Shewana3_4162at 25.543 kb on - strand, within Shewana3_4162at 25.864 kb on - strandat 25.886 kb on - strandat 25.900 kb on + strandat 25.908 kb on - strandat 25.966 kb on - strandat 25.966 kb on - strandat 26.126 kb on + strand, within Shewana3_4163at 26.134 kb on - strand, within Shewana3_4163at 26.278 kb on + strand, within Shewana3_4163at 26.566 kb on - strand, within Shewana3_4163at 26.583 kb on + strand, within Shewana3_4163at 26.590 kb on + strand, within Shewana3_4163at 26.590 kb on + strand, within Shewana3_4163at 26.598 kb on - strand, within Shewana3_4163at 26.598 kb on - strand, within Shewana3_4163at 26.632 kb on - strand, within Shewana3_4163at 26.802 kb on + strand, within Shewana3_4163at 26.802 kb on + strand, within Shewana3_4163at 27.010 kb on + strand, within Shewana3_4163at 27.582 kb on - strandat 27.860 kb on + strand, within Shewana3_4164at 27.911 kb on - strand, within Shewana3_4164at 28.017 kb on + strand, within Shewana3_4164at 28.025 kb on - strand, within Shewana3_4164at 28.052 kb on + strand, within Shewana3_4164at 28.060 kb on - strand, within Shewana3_4164

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
remove
25,016 + Shewana3_4162 0.66 +0.8
25,082 + Shewana3_4162 0.68 -0.1
25,090 - Shewana3_4162 0.69 -2.7
25,090 - Shewana3_4162 0.69 -0.6
25,100 - Shewana3_4162 0.69 +0.5
25,137 + Shewana3_4162 0.70 -1.7
25,178 + Shewana3_4162 0.72 -1.3
25,202 - Shewana3_4162 0.73 -1.8
25,285 - Shewana3_4162 0.76 -0.1
25,412 + Shewana3_4162 0.81 -0.2
25,420 - Shewana3_4162 0.81 -1.0
25,420 - Shewana3_4162 0.81 -1.0
25,420 - Shewana3_4162 0.81 -1.3
25,420 - Shewana3_4162 0.81 -0.5
25,543 - Shewana3_4162 0.86 +1.5
25,864 - -2.5
25,886 - -1.1
25,900 + +0.6
25,908 - -0.5
25,966 - +2.5
25,966 - +0.5
26,126 + Shewana3_4163 0.17 -1.6
26,134 - Shewana3_4163 0.18 -0.8
26,278 + Shewana3_4163 0.30 -0.7
26,566 - Shewana3_4163 0.53 -0.9
26,583 + Shewana3_4163 0.55 -0.8
26,590 + Shewana3_4163 0.55 -1.5
26,590 + Shewana3_4163 0.55 -0.2
26,598 - Shewana3_4163 0.56 -1.1
26,598 - Shewana3_4163 0.56 -0.5
26,632 - Shewana3_4163 0.59 -2.1
26,802 + Shewana3_4163 0.73 -0.9
26,802 + Shewana3_4163 0.73 -0.9
27,010 + Shewana3_4163 0.90 -1.7
27,582 - -0.1
27,860 + Shewana3_4164 0.17 -0.3
27,911 - Shewana3_4164 0.19 -0.1
28,017 + Shewana3_4164 0.22 -0.7
28,025 - Shewana3_4164 0.22 -0.8
28,052 + Shewana3_4164 0.23 +0.2
28,060 - Shewana3_4164 0.23 -0.8

Or see this region's nucleotide sequence