Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4162 and Shewana3_4163 are separated by 1 nucleotides Shewana3_4163 and Shewana3_4164 are separated by 171 nucleotides
Shewana3_4162: Shewana3_4162 - type I restriction-modification system, M subunit (RefSeq), at 23,291 to 25,915
_4162
Shewana3_4163: Shewana3_4163 - restriction modification system DNA specificity subunit (RefSeq), at 25,917 to 27,134
_4163
Shewana3_4164: Shewana3_4164 - HsdR family type I site-specific deoxyribonuclease (RefSeq), at 27,306 to 30,536
_4164
Position (kb)
25
26
27
28 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 25.016 kb on + strand, within Shewana3_4162 at 25.082 kb on + strand, within Shewana3_4162 at 25.090 kb on - strand, within Shewana3_4162 at 25.090 kb on - strand, within Shewana3_4162 at 25.100 kb on - strand, within Shewana3_4162 at 25.137 kb on + strand, within Shewana3_4162 at 25.178 kb on + strand, within Shewana3_4162 at 25.202 kb on - strand, within Shewana3_4162 at 25.285 kb on - strand, within Shewana3_4162 at 25.412 kb on + strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.543 kb on - strand, within Shewana3_4162 at 25.864 kb on - strand at 25.886 kb on - strand at 25.900 kb on + strand at 25.908 kb on - strand at 25.966 kb on - strand at 25.966 kb on - strand at 26.126 kb on + strand, within Shewana3_4163 at 26.134 kb on - strand, within Shewana3_4163 at 26.278 kb on + strand, within Shewana3_4163 at 26.566 kb on - strand, within Shewana3_4163 at 26.583 kb on + strand, within Shewana3_4163 at 26.590 kb on + strand, within Shewana3_4163 at 26.590 kb on + strand, within Shewana3_4163 at 26.598 kb on - strand, within Shewana3_4163 at 26.598 kb on - strand, within Shewana3_4163 at 26.632 kb on - strand, within Shewana3_4163 at 26.802 kb on + strand, within Shewana3_4163 at 26.802 kb on + strand, within Shewana3_4163 at 27.010 kb on + strand, within Shewana3_4163 at 27.582 kb on - strand at 27.860 kb on + strand, within Shewana3_4164 at 27.911 kb on - strand, within Shewana3_4164 at 28.017 kb on + strand, within Shewana3_4164 at 28.025 kb on - strand, within Shewana3_4164 at 28.052 kb on + strand, within Shewana3_4164 at 28.060 kb on - strand, within Shewana3_4164
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 25,016 + Shewana3_4162 0.66 +0.8 25,082 + Shewana3_4162 0.68 -0.1 25,090 - Shewana3_4162 0.69 -2.7 25,090 - Shewana3_4162 0.69 -0.6 25,100 - Shewana3_4162 0.69 +0.5 25,137 + Shewana3_4162 0.70 -1.7 25,178 + Shewana3_4162 0.72 -1.3 25,202 - Shewana3_4162 0.73 -1.8 25,285 - Shewana3_4162 0.76 -0.1 25,412 + Shewana3_4162 0.81 -0.2 25,420 - Shewana3_4162 0.81 -1.0 25,420 - Shewana3_4162 0.81 -1.0 25,420 - Shewana3_4162 0.81 -1.3 25,420 - Shewana3_4162 0.81 -0.5 25,543 - Shewana3_4162 0.86 +1.5 25,864 - -2.5 25,886 - -1.1 25,900 + +0.6 25,908 - -0.5 25,966 - +2.5 25,966 - +0.5 26,126 + Shewana3_4163 0.17 -1.6 26,134 - Shewana3_4163 0.18 -0.8 26,278 + Shewana3_4163 0.30 -0.7 26,566 - Shewana3_4163 0.53 -0.9 26,583 + Shewana3_4163 0.55 -0.8 26,590 + Shewana3_4163 0.55 -1.5 26,590 + Shewana3_4163 0.55 -0.2 26,598 - Shewana3_4163 0.56 -1.1 26,598 - Shewana3_4163 0.56 -0.5 26,632 - Shewana3_4163 0.59 -2.1 26,802 + Shewana3_4163 0.73 -0.9 26,802 + Shewana3_4163 0.73 -0.9 27,010 + Shewana3_4163 0.90 -1.7 27,582 - -0.1 27,860 + Shewana3_4164 0.17 -0.3 27,911 - Shewana3_4164 0.19 -0.1 28,017 + Shewana3_4164 0.22 -0.7 28,025 - Shewana3_4164 0.22 -0.8 28,052 + Shewana3_4164 0.23 +0.2 28,060 - Shewana3_4164 0.23 -0.8
Or see this region's nucleotide sequence