Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4141 and Shewana3_4142 are separated by 242 nucleotides
Shewana3_4141: Shewana3_4141 - putative transposase (RefSeq), at 1,030 to 1,248
_4141
Shewana3_4142: Shewana3_4142 - IS4 family transposase (RefSeq), at 1,491 to 2,471
_4142
Position (kb) 1
2 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 0.034 kb on - strand at 0.051 kb on + strand at 0.090 kb on + strand at 0.098 kb on - strand at 0.098 kb on - strand at 0.113 kb on + strand at 0.113 kb on + strand at 0.113 kb on + strand at 0.113 kb on + strand at 0.130 kb on - strand at 0.147 kb on + strand at 0.163 kb on - strand at 0.363 kb on + strand at 0.363 kb on + strand at 0.383 kb on + strand at 0.408 kb on + strand at 0.421 kb on + strand at 0.423 kb on + strand at 0.431 kb on + strand at 0.431 kb on + strand at 0.431 kb on + strand at 0.431 kb on + strand at 0.431 kb on - strand at 0.431 kb on - strand at 0.431 kb on - strand at 0.431 kb on - strand at 0.431 kb on - strand at 0.433 kb on + strand at 0.439 kb on - strand at 0.441 kb on - strand at 0.441 kb on - strand at 0.458 kb on - strand at 0.491 kb on - strand at 0.543 kb on + strand at 0.543 kb on + strand at 0.545 kb on + strand at 0.545 kb on + strand at 0.551 kb on - strand at 0.566 kb on - strand at 0.568 kb on + strand at 0.576 kb on - strand at 0.585 kb on - strand at 0.652 kb on + strand at 0.652 kb on + strand at 0.652 kb on + strand at 0.660 kb on - strand at 0.660 kb on - strand at 0.660 kb on - strand at 0.660 kb on - strand at 0.769 kb on + strand at 0.769 kb on + strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.807 kb on - strand at 0.808 kb on - strand at 0.808 kb on - strand at 0.826 kb on - strand at 0.835 kb on - strand at 0.836 kb on - strand at 0.841 kb on + strand at 0.843 kb on - strand at 0.857 kb on + strand at 0.857 kb on + strand at 0.865 kb on - strand at 0.865 kb on - strand at 0.865 kb on - strand at 0.865 kb on - strand at 0.929 kb on - strand at 0.929 kb on - strand at 0.929 kb on - strand at 0.938 kb on - strand at 0.960 kb on + strand at 0.968 kb on - strand at 0.975 kb on + strand at 0.975 kb on + strand at 0.983 kb on - strand at 0.983 kb on - strand at 0.983 kb on - strand at 0.988 kb on + strand at 0.996 kb on - strand at 0.999 kb on - strand at 1.040 kb on - strand at 1.040 kb on - strand at 1.102 kb on + strand, within Shewana3_4141 at 1.138 kb on - strand, within Shewana3_4141 at 1.138 kb on - strand, within Shewana3_4141 at 1.156 kb on + strand, within Shewana3_4141 at 1.269 kb on + strand at 1.279 kb on + strand at 1.321 kb on - strand at 1.323 kb on + strand at 1.596 kb on - strand, within Shewana3_4142 at 1.689 kb on - strand, within Shewana3_4142 at 1.980 kb on - strand, within Shewana3_4142 at 2.130 kb on - strand, within Shewana3_4142 at 2.130 kb on - strand, within Shewana3_4142 at 2.181 kb on - strand, within Shewana3_4142
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 34 - +1.5 51 + +1.5 90 + -1.8 98 - -0.1 98 - -1.1 113 + -2.8 113 + -1.2 113 + -2.5 113 + +1.5 130 - -0.5 147 + +0.5 163 - -0.9 363 + +0.5 363 + -0.1 383 + -2.1 408 + -1.3 421 + +0.5 423 + +1.5 431 + -0.1 431 + -0.1 431 + -1.5 431 + -0.5 431 - +0.5 431 - -1.4 431 - -0.5 431 - -1.5 431 - +0.5 433 + +0.5 439 - +0.5 441 - -0.9 441 - -1.4 458 - -2.4 491 - -2.5 543 + +0.5 543 + +2.5 545 + +1.5 545 + -2.1 551 - -0.8 566 - +2.0 568 + -0.5 576 - -0.5 585 - -0.4 652 + +1.0 652 + -1.5 652 + -1.4 660 - -2.0 660 - -2.1 660 - -0.0 660 - -1.1 769 + -1.1 769 + -0.2 777 - -0.5 777 - -1.5 777 - +1.5 777 - -0.1 777 - -2.4 777 - -0.4 807 - -0.5 808 - -1.4 808 - -1.4 826 - -0.9 835 - -0.9 836 - -1.0 841 + -0.1 843 - +1.5 857 + -0.7 857 + +0.6 865 - +0.9 865 - -0.1 865 - -1.4 865 - -0.0 929 - -1.0 929 - -1.3 929 - -0.1 938 - -0.8 960 + -1.1 968 - -0.8 975 + -1.4 975 + -1.5 983 - -0.7 983 - -0.9 983 - -0.8 988 + -0.8 996 - -0.3 999 - -0.5 1,040 - +0.9 1,040 - -0.5 1,102 + Shewana3_4141 0.33 -1.7 1,138 - Shewana3_4141 0.49 -0.3 1,138 - Shewana3_4141 0.49 -0.2 1,156 + Shewana3_4141 0.58 -0.0 1,269 + +1.5 1,279 + -1.1 1,321 - -0.1 1,323 + -0.5 1,596 - Shewana3_4142 0.11 -0.6 1,689 - Shewana3_4142 0.20 +0.4 1,980 - Shewana3_4142 0.50 -0.4 2,130 - Shewana3_4142 0.65 -1.9 2,130 - Shewana3_4142 0.65 -0.1 2,181 - Shewana3_4142 0.70 +0.1
Or see this region's nucleotide sequence