Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5373

Experiment: acetate 80 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5372 and Pf6N2E2_5373 overlap by 11 nucleotidesPf6N2E2_5373 and Pf6N2E2_5374 are separated by 10 nucleotides Pf6N2E2_5372 - Inner membrane component of tripartite multidrug resistance system, at 6,173,011 to 6,175,143 _5372 Pf6N2E2_5373 - required for cephalothin efflux, together with NodT, MFP and FUSC proteins (Pf6N2E2_5371, Pf6N2E2_5374, Pf6N2E2_5372) (from data), at 6,175,133 to 6,175,333 _5373 Pf6N2E2_5374 - Membrane fusion component of tripartite multidrug resistance system, at 6,175,344 to 6,176,207 _5374 Position (kb) 6175 6176Strain fitness (log2 ratio) -2 -1 0 1at 6174.482 kb on - strand, within Pf6N2E2_5372at 6174.499 kb on - strand, within Pf6N2E2_5372at 6174.508 kb on + strand, within Pf6N2E2_5372at 6174.508 kb on + strand, within Pf6N2E2_5372at 6174.509 kb on - strand, within Pf6N2E2_5372at 6174.509 kb on - strand, within Pf6N2E2_5372at 6174.509 kb on - strand, within Pf6N2E2_5372at 6174.812 kb on + strand, within Pf6N2E2_5372at 6174.830 kb on - strand, within Pf6N2E2_5372at 6174.830 kb on - strand, within Pf6N2E2_5372at 6174.830 kb on - strand, within Pf6N2E2_5372at 6175.024 kb on + strandat 6175.024 kb on + strandat 6175.025 kb on - strandat 6175.078 kb on + strandat 6175.085 kb on + strandat 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.163 kb on + strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.164 kb on - strand, within Pf6N2E2_5373at 6175.291 kb on + strand, within Pf6N2E2_5373at 6175.291 kb on + strand, within Pf6N2E2_5373at 6175.292 kb on - strand, within Pf6N2E2_5373at 6175.325 kb on + strandat 6175.325 kb on + strandat 6175.414 kb on + strandat 6175.425 kb on + strandat 6175.425 kb on + strandat 6175.425 kb on + strandat 6175.425 kb on + strandat 6175.425 kb on + strandat 6175.425 kb on + strandat 6175.425 kb on + strandat 6175.425 kb on + strandat 6175.425 kb on + strandat 6175.425 kb on + strandat 6175.426 kb on - strandat 6175.426 kb on - strandat 6175.426 kb on - strandat 6175.426 kb on - strandat 6175.426 kb on - strandat 6175.426 kb on - strandat 6175.426 kb on - strandat 6175.426 kb on - strandat 6175.426 kb on - strandat 6175.821 kb on + strand, within Pf6N2E2_5374at 6175.911 kb on + strand, within Pf6N2E2_5374at 6175.911 kb on + strand, within Pf6N2E2_5374at 6175.912 kb on - strand, within Pf6N2E2_5374at 6175.912 kb on - strand, within Pf6N2E2_5374at 6175.912 kb on - strand, within Pf6N2E2_5374at 6176.028 kb on + strand, within Pf6N2E2_5374at 6176.028 kb on + strand, within Pf6N2E2_5374at 6176.029 kb on - strand, within Pf6N2E2_5374at 6176.029 kb on - strand, within Pf6N2E2_5374at 6176.137 kb on + strandat 6176.310 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 80 mM
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6,174,482 - Pf6N2E2_5372 0.69 -1.2
6,174,499 - Pf6N2E2_5372 0.70 -0.9
6,174,508 + Pf6N2E2_5372 0.70 -0.8
6,174,508 + Pf6N2E2_5372 0.70 +0.4
6,174,509 - Pf6N2E2_5372 0.70 -0.3
6,174,509 - Pf6N2E2_5372 0.70 -0.8
6,174,509 - Pf6N2E2_5372 0.70 -1.5
6,174,812 + Pf6N2E2_5372 0.84 -0.2
6,174,830 - Pf6N2E2_5372 0.85 -2.2
6,174,830 - Pf6N2E2_5372 0.85 +0.5
6,174,830 - Pf6N2E2_5372 0.85 -0.8
6,175,024 + -0.3
6,175,024 + -0.8
6,175,025 - -0.3
6,175,078 + -0.9
6,175,085 + +0.5
6,175,163 + Pf6N2E2_5373 0.15 -0.6
6,175,163 + Pf6N2E2_5373 0.15 -0.8
6,175,163 + Pf6N2E2_5373 0.15 -1.3
6,175,163 + Pf6N2E2_5373 0.15 +1.1
6,175,163 + Pf6N2E2_5373 0.15 -0.1
6,175,163 + Pf6N2E2_5373 0.15 -1.2
6,175,163 + Pf6N2E2_5373 0.15 -0.8
6,175,163 + Pf6N2E2_5373 0.15 -0.0
6,175,163 + Pf6N2E2_5373 0.15 -0.6
6,175,163 + Pf6N2E2_5373 0.15 -1.2
6,175,163 + Pf6N2E2_5373 0.15 -0.4
6,175,163 + Pf6N2E2_5373 0.15 -0.4
6,175,163 + Pf6N2E2_5373 0.15 -0.0
6,175,163 + Pf6N2E2_5373 0.15 -0.5
6,175,164 - Pf6N2E2_5373 0.15 -1.1
6,175,164 - Pf6N2E2_5373 0.15 -0.3
6,175,164 - Pf6N2E2_5373 0.15 -1.0
6,175,164 - Pf6N2E2_5373 0.15 -0.5
6,175,164 - Pf6N2E2_5373 0.15 -0.8
6,175,164 - Pf6N2E2_5373 0.15 -1.9
6,175,164 - Pf6N2E2_5373 0.15 -0.9
6,175,164 - Pf6N2E2_5373 0.15 -1.4
6,175,164 - Pf6N2E2_5373 0.15 -1.2
6,175,164 - Pf6N2E2_5373 0.15 -0.2
6,175,164 - Pf6N2E2_5373 0.15 -1.0
6,175,164 - Pf6N2E2_5373 0.15 -1.3
6,175,164 - Pf6N2E2_5373 0.15 -0.5
6,175,164 - Pf6N2E2_5373 0.15 -0.3
6,175,164 - Pf6N2E2_5373 0.15 -1.8
6,175,164 - Pf6N2E2_5373 0.15 -0.6
6,175,164 - Pf6N2E2_5373 0.15 -0.4
6,175,291 + Pf6N2E2_5373 0.79 +0.1
6,175,291 + Pf6N2E2_5373 0.79 +0.4
6,175,292 - Pf6N2E2_5373 0.79 -0.7
6,175,325 + +0.2
6,175,325 + +0.7
6,175,414 + -0.5
6,175,425 + -0.9
6,175,425 + -0.8
6,175,425 + -0.8
6,175,425 + -0.5
6,175,425 + -0.7
6,175,425 + -0.7
6,175,425 + -1.1
6,175,425 + -0.6
6,175,425 + +0.2
6,175,425 + -0.6
6,175,426 - +0.4
6,175,426 - -1.4
6,175,426 - -0.3
6,175,426 - -0.1
6,175,426 - -0.7
6,175,426 - -1.2
6,175,426 - +0.0
6,175,426 - -0.4
6,175,426 - -0.8
6,175,821 + Pf6N2E2_5374 0.55 -0.6
6,175,911 + Pf6N2E2_5374 0.66 -0.5
6,175,911 + Pf6N2E2_5374 0.66 -0.6
6,175,912 - Pf6N2E2_5374 0.66 -0.5
6,175,912 - Pf6N2E2_5374 0.66 +0.3
6,175,912 - Pf6N2E2_5374 0.66 -1.6
6,176,028 + Pf6N2E2_5374 0.79 -0.6
6,176,028 + Pf6N2E2_5374 0.79 -1.0
6,176,029 - Pf6N2E2_5374 0.79 +0.2
6,176,029 - Pf6N2E2_5374 0.79 -0.2
6,176,137 + -0.2
6,176,310 + +0.4

Or see this region's nucleotide sequence