Experiment: acetate 80 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5372 and Pf6N2E2_5373 overlap by 11 nucleotides Pf6N2E2_5373 and Pf6N2E2_5374 are separated by 10 nucleotides
Pf6N2E2_5372 - Inner membrane component of tripartite multidrug resistance system, at 6,173,011 to 6,175,143
_5372
Pf6N2E2_5373 - required for cephalothin efflux, together with NodT, MFP and FUSC proteins (Pf6N2E2_5371, Pf6N2E2_5374, Pf6N2E2_5372) (from data) , at 6,175,133 to 6,175,333
_5373
Pf6N2E2_5374 - Membrane fusion component of tripartite multidrug resistance system, at 6,175,344 to 6,176,207
_5374
Position (kb)
6175
6176 Strain fitness (log2 ratio)
-2
-1
0
1 at 6174.482 kb on - strand, within Pf6N2E2_5372 at 6174.499 kb on - strand, within Pf6N2E2_5372 at 6174.508 kb on + strand, within Pf6N2E2_5372 at 6174.508 kb on + strand, within Pf6N2E2_5372 at 6174.509 kb on - strand, within Pf6N2E2_5372 at 6174.509 kb on - strand, within Pf6N2E2_5372 at 6174.509 kb on - strand, within Pf6N2E2_5372 at 6174.812 kb on + strand, within Pf6N2E2_5372 at 6174.830 kb on - strand, within Pf6N2E2_5372 at 6174.830 kb on - strand, within Pf6N2E2_5372 at 6174.830 kb on - strand, within Pf6N2E2_5372 at 6175.024 kb on + strand at 6175.024 kb on + strand at 6175.025 kb on - strand at 6175.078 kb on + strand at 6175.085 kb on + strand at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.163 kb on + strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.164 kb on - strand, within Pf6N2E2_5373 at 6175.291 kb on + strand, within Pf6N2E2_5373 at 6175.291 kb on + strand, within Pf6N2E2_5373 at 6175.292 kb on - strand, within Pf6N2E2_5373 at 6175.325 kb on + strand at 6175.325 kb on + strand at 6175.414 kb on + strand at 6175.425 kb on + strand at 6175.425 kb on + strand at 6175.425 kb on + strand at 6175.425 kb on + strand at 6175.425 kb on + strand at 6175.425 kb on + strand at 6175.425 kb on + strand at 6175.425 kb on + strand at 6175.425 kb on + strand at 6175.425 kb on + strand at 6175.426 kb on - strand at 6175.426 kb on - strand at 6175.426 kb on - strand at 6175.426 kb on - strand at 6175.426 kb on - strand at 6175.426 kb on - strand at 6175.426 kb on - strand at 6175.426 kb on - strand at 6175.426 kb on - strand at 6175.821 kb on + strand, within Pf6N2E2_5374 at 6175.911 kb on + strand, within Pf6N2E2_5374 at 6175.911 kb on + strand, within Pf6N2E2_5374 at 6175.912 kb on - strand, within Pf6N2E2_5374 at 6175.912 kb on - strand, within Pf6N2E2_5374 at 6175.912 kb on - strand, within Pf6N2E2_5374 at 6176.028 kb on + strand, within Pf6N2E2_5374 at 6176.028 kb on + strand, within Pf6N2E2_5374 at 6176.029 kb on - strand, within Pf6N2E2_5374 at 6176.029 kb on - strand, within Pf6N2E2_5374 at 6176.137 kb on + strand at 6176.310 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 80 mM remove 6,174,482 - Pf6N2E2_5372 0.69 -1.2 6,174,499 - Pf6N2E2_5372 0.70 -0.9 6,174,508 + Pf6N2E2_5372 0.70 -0.8 6,174,508 + Pf6N2E2_5372 0.70 +0.4 6,174,509 - Pf6N2E2_5372 0.70 -0.3 6,174,509 - Pf6N2E2_5372 0.70 -0.8 6,174,509 - Pf6N2E2_5372 0.70 -1.5 6,174,812 + Pf6N2E2_5372 0.84 -0.2 6,174,830 - Pf6N2E2_5372 0.85 -2.2 6,174,830 - Pf6N2E2_5372 0.85 +0.5 6,174,830 - Pf6N2E2_5372 0.85 -0.8 6,175,024 + -0.3 6,175,024 + -0.8 6,175,025 - -0.3 6,175,078 + -0.9 6,175,085 + +0.5 6,175,163 + Pf6N2E2_5373 0.15 -0.6 6,175,163 + Pf6N2E2_5373 0.15 -0.8 6,175,163 + Pf6N2E2_5373 0.15 -1.3 6,175,163 + Pf6N2E2_5373 0.15 +1.1 6,175,163 + Pf6N2E2_5373 0.15 -0.1 6,175,163 + Pf6N2E2_5373 0.15 -1.2 6,175,163 + Pf6N2E2_5373 0.15 -0.8 6,175,163 + Pf6N2E2_5373 0.15 -0.0 6,175,163 + Pf6N2E2_5373 0.15 -0.6 6,175,163 + Pf6N2E2_5373 0.15 -1.2 6,175,163 + Pf6N2E2_5373 0.15 -0.4 6,175,163 + Pf6N2E2_5373 0.15 -0.4 6,175,163 + Pf6N2E2_5373 0.15 -0.0 6,175,163 + Pf6N2E2_5373 0.15 -0.5 6,175,164 - Pf6N2E2_5373 0.15 -1.1 6,175,164 - Pf6N2E2_5373 0.15 -0.3 6,175,164 - Pf6N2E2_5373 0.15 -1.0 6,175,164 - Pf6N2E2_5373 0.15 -0.5 6,175,164 - Pf6N2E2_5373 0.15 -0.8 6,175,164 - Pf6N2E2_5373 0.15 -1.9 6,175,164 - Pf6N2E2_5373 0.15 -0.9 6,175,164 - Pf6N2E2_5373 0.15 -1.4 6,175,164 - Pf6N2E2_5373 0.15 -1.2 6,175,164 - Pf6N2E2_5373 0.15 -0.2 6,175,164 - Pf6N2E2_5373 0.15 -1.0 6,175,164 - Pf6N2E2_5373 0.15 -1.3 6,175,164 - Pf6N2E2_5373 0.15 -0.5 6,175,164 - Pf6N2E2_5373 0.15 -0.3 6,175,164 - Pf6N2E2_5373 0.15 -1.8 6,175,164 - Pf6N2E2_5373 0.15 -0.6 6,175,164 - Pf6N2E2_5373 0.15 -0.4 6,175,291 + Pf6N2E2_5373 0.79 +0.1 6,175,291 + Pf6N2E2_5373 0.79 +0.4 6,175,292 - Pf6N2E2_5373 0.79 -0.7 6,175,325 + +0.2 6,175,325 + +0.7 6,175,414 + -0.5 6,175,425 + -0.9 6,175,425 + -0.8 6,175,425 + -0.8 6,175,425 + -0.5 6,175,425 + -0.7 6,175,425 + -0.7 6,175,425 + -1.1 6,175,425 + -0.6 6,175,425 + +0.2 6,175,425 + -0.6 6,175,426 - +0.4 6,175,426 - -1.4 6,175,426 - -0.3 6,175,426 - -0.1 6,175,426 - -0.7 6,175,426 - -1.2 6,175,426 - +0.0 6,175,426 - -0.4 6,175,426 - -0.8 6,175,821 + Pf6N2E2_5374 0.55 -0.6 6,175,911 + Pf6N2E2_5374 0.66 -0.5 6,175,911 + Pf6N2E2_5374 0.66 -0.6 6,175,912 - Pf6N2E2_5374 0.66 -0.5 6,175,912 - Pf6N2E2_5374 0.66 +0.3 6,175,912 - Pf6N2E2_5374 0.66 -1.6 6,176,028 + Pf6N2E2_5374 0.79 -0.6 6,176,028 + Pf6N2E2_5374 0.79 -1.0 6,176,029 - Pf6N2E2_5374 0.79 +0.2 6,176,029 - Pf6N2E2_5374 0.79 -0.2 6,176,137 + -0.2 6,176,310 + +0.4
Or see this region's nucleotide sequence