Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3989

Experiment: acetate 80 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3988 and Pf6N2E2_3989 are separated by 32 nucleotidesPf6N2E2_3989 and Pf6N2E2_3990 are separated by 374 nucleotides Pf6N2E2_3988 - Non-ribosomal peptide synthetase modules and related proteins, at 4,654,392 to 4,657,811 _3988 Pf6N2E2_3989 - FIG00958473: hypothetical protein, at 4,657,844 to 4,658,308 _3989 Pf6N2E2_3990 - Chemotactic transducer, at 4,658,683 to 4,660,563 _3990 Position (kb) 4657 4658 4659Strain fitness (log2 ratio) -1 0 1at 4656.972 kb on + strand, within Pf6N2E2_3988at 4656.973 kb on - strand, within Pf6N2E2_3988at 4656.973 kb on - strand, within Pf6N2E2_3988at 4656.973 kb on - strand, within Pf6N2E2_3988at 4656.982 kb on + strand, within Pf6N2E2_3988at 4656.982 kb on + strand, within Pf6N2E2_3988at 4656.983 kb on - strand, within Pf6N2E2_3988at 4656.983 kb on - strand, within Pf6N2E2_3988at 4657.209 kb on + strand, within Pf6N2E2_3988at 4657.209 kb on + strand, within Pf6N2E2_3988at 4657.210 kb on - strand, within Pf6N2E2_3988at 4657.224 kb on + strand, within Pf6N2E2_3988at 4657.225 kb on - strand, within Pf6N2E2_3988at 4657.536 kb on + strandat 4657.536 kb on + strandat 4657.536 kb on + strandat 4657.537 kb on - strandat 4657.537 kb on - strandat 4657.537 kb on - strandat 4657.537 kb on - strandat 4657.653 kb on + strandat 4657.686 kb on - strandat 4657.686 kb on - strandat 4657.785 kb on + strandat 4657.785 kb on + strandat 4657.785 kb on + strandat 4657.785 kb on + strandat 4657.786 kb on - strandat 4657.947 kb on + strand, within Pf6N2E2_3989at 4657.947 kb on + strand, within Pf6N2E2_3989at 4657.948 kb on - strand, within Pf6N2E2_3989at 4657.948 kb on - strand, within Pf6N2E2_3989at 4658.120 kb on + strand, within Pf6N2E2_3989at 4658.121 kb on - strand, within Pf6N2E2_3989at 4658.121 kb on - strand, within Pf6N2E2_3989at 4658.335 kb on + strandat 4658.335 kb on + strandat 4658.335 kb on + strandat 4658.336 kb on - strandat 4658.336 kb on - strandat 4658.336 kb on - strandat 4658.336 kb on - strandat 4658.336 kb on - strandat 4658.336 kb on - strandat 4658.697 kb on + strandat 4658.698 kb on - strandat 4659.015 kb on + strand, within Pf6N2E2_3990at 4659.015 kb on + strand, within Pf6N2E2_3990

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 80 mM
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4,656,972 + Pf6N2E2_3988 0.75 -0.3
4,656,973 - Pf6N2E2_3988 0.75 -0.4
4,656,973 - Pf6N2E2_3988 0.75 -0.2
4,656,973 - Pf6N2E2_3988 0.75 +0.8
4,656,982 + Pf6N2E2_3988 0.76 +0.4
4,656,982 + Pf6N2E2_3988 0.76 -0.3
4,656,983 - Pf6N2E2_3988 0.76 -0.3
4,656,983 - Pf6N2E2_3988 0.76 -0.1
4,657,209 + Pf6N2E2_3988 0.82 +0.3
4,657,209 + Pf6N2E2_3988 0.82 -0.1
4,657,210 - Pf6N2E2_3988 0.82 -0.1
4,657,224 + Pf6N2E2_3988 0.83 +0.3
4,657,225 - Pf6N2E2_3988 0.83 -0.0
4,657,536 + -0.4
4,657,536 + -1.1
4,657,536 + -1.2
4,657,537 - +0.3
4,657,537 - +0.4
4,657,537 - +0.0
4,657,537 - +0.3
4,657,653 + -0.4
4,657,686 - -0.1
4,657,686 - +0.1
4,657,785 + -0.0
4,657,785 + -0.2
4,657,785 + -0.2
4,657,785 + +0.4
4,657,786 - +0.1
4,657,947 + Pf6N2E2_3989 0.22 -0.4
4,657,947 + Pf6N2E2_3989 0.22 -0.3
4,657,948 - Pf6N2E2_3989 0.22 -0.9
4,657,948 - Pf6N2E2_3989 0.22 -0.8
4,658,120 + Pf6N2E2_3989 0.59 +0.1
4,658,121 - Pf6N2E2_3989 0.60 -0.2
4,658,121 - Pf6N2E2_3989 0.60 -0.4
4,658,335 + -0.0
4,658,335 + +0.3
4,658,335 + -0.2
4,658,336 - +0.4
4,658,336 - -0.7
4,658,336 - +0.6
4,658,336 - -0.6
4,658,336 - +0.0
4,658,336 - -1.4
4,658,697 + +0.8
4,658,698 - +1.3
4,659,015 + Pf6N2E2_3990 0.18 +0.3
4,659,015 + Pf6N2E2_3990 0.18 +0.0

Or see this region's nucleotide sequence