Experiment: acetate 80 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3988 and Pf6N2E2_3989 are separated by 32 nucleotides Pf6N2E2_3989 and Pf6N2E2_3990 are separated by 374 nucleotides
Pf6N2E2_3988 - Non-ribosomal peptide synthetase modules and related proteins, at 4,654,392 to 4,657,811
_3988
Pf6N2E2_3989 - FIG00958473: hypothetical protein, at 4,657,844 to 4,658,308
_3989
Pf6N2E2_3990 - Chemotactic transducer, at 4,658,683 to 4,660,563
_3990
Position (kb)
4657
4658
4659 Strain fitness (log2 ratio)
-1
0
1 at 4656.972 kb on + strand, within Pf6N2E2_3988 at 4656.973 kb on - strand, within Pf6N2E2_3988 at 4656.973 kb on - strand, within Pf6N2E2_3988 at 4656.973 kb on - strand, within Pf6N2E2_3988 at 4656.982 kb on + strand, within Pf6N2E2_3988 at 4656.982 kb on + strand, within Pf6N2E2_3988 at 4656.983 kb on - strand, within Pf6N2E2_3988 at 4656.983 kb on - strand, within Pf6N2E2_3988 at 4657.209 kb on + strand, within Pf6N2E2_3988 at 4657.209 kb on + strand, within Pf6N2E2_3988 at 4657.210 kb on - strand, within Pf6N2E2_3988 at 4657.224 kb on + strand, within Pf6N2E2_3988 at 4657.225 kb on - strand, within Pf6N2E2_3988 at 4657.536 kb on + strand at 4657.536 kb on + strand at 4657.536 kb on + strand at 4657.537 kb on - strand at 4657.537 kb on - strand at 4657.537 kb on - strand at 4657.537 kb on - strand at 4657.653 kb on + strand at 4657.686 kb on - strand at 4657.686 kb on - strand at 4657.785 kb on + strand at 4657.785 kb on + strand at 4657.785 kb on + strand at 4657.785 kb on + strand at 4657.786 kb on - strand at 4657.947 kb on + strand, within Pf6N2E2_3989 at 4657.947 kb on + strand, within Pf6N2E2_3989 at 4657.948 kb on - strand, within Pf6N2E2_3989 at 4657.948 kb on - strand, within Pf6N2E2_3989 at 4658.120 kb on + strand, within Pf6N2E2_3989 at 4658.121 kb on - strand, within Pf6N2E2_3989 at 4658.121 kb on - strand, within Pf6N2E2_3989 at 4658.335 kb on + strand at 4658.335 kb on + strand at 4658.335 kb on + strand at 4658.336 kb on - strand at 4658.336 kb on - strand at 4658.336 kb on - strand at 4658.336 kb on - strand at 4658.336 kb on - strand at 4658.336 kb on - strand at 4658.697 kb on + strand at 4658.698 kb on - strand at 4659.015 kb on + strand, within Pf6N2E2_3990 at 4659.015 kb on + strand, within Pf6N2E2_3990
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 80 mM remove 4,656,972 + Pf6N2E2_3988 0.75 -0.3 4,656,973 - Pf6N2E2_3988 0.75 -0.4 4,656,973 - Pf6N2E2_3988 0.75 -0.2 4,656,973 - Pf6N2E2_3988 0.75 +0.8 4,656,982 + Pf6N2E2_3988 0.76 +0.4 4,656,982 + Pf6N2E2_3988 0.76 -0.3 4,656,983 - Pf6N2E2_3988 0.76 -0.3 4,656,983 - Pf6N2E2_3988 0.76 -0.1 4,657,209 + Pf6N2E2_3988 0.82 +0.3 4,657,209 + Pf6N2E2_3988 0.82 -0.1 4,657,210 - Pf6N2E2_3988 0.82 -0.1 4,657,224 + Pf6N2E2_3988 0.83 +0.3 4,657,225 - Pf6N2E2_3988 0.83 -0.0 4,657,536 + -0.4 4,657,536 + -1.1 4,657,536 + -1.2 4,657,537 - +0.3 4,657,537 - +0.4 4,657,537 - +0.0 4,657,537 - +0.3 4,657,653 + -0.4 4,657,686 - -0.1 4,657,686 - +0.1 4,657,785 + -0.0 4,657,785 + -0.2 4,657,785 + -0.2 4,657,785 + +0.4 4,657,786 - +0.1 4,657,947 + Pf6N2E2_3989 0.22 -0.4 4,657,947 + Pf6N2E2_3989 0.22 -0.3 4,657,948 - Pf6N2E2_3989 0.22 -0.9 4,657,948 - Pf6N2E2_3989 0.22 -0.8 4,658,120 + Pf6N2E2_3989 0.59 +0.1 4,658,121 - Pf6N2E2_3989 0.60 -0.2 4,658,121 - Pf6N2E2_3989 0.60 -0.4 4,658,335 + -0.0 4,658,335 + +0.3 4,658,335 + -0.2 4,658,336 - +0.4 4,658,336 - -0.7 4,658,336 - +0.6 4,658,336 - -0.6 4,658,336 - +0.0 4,658,336 - -1.4 4,658,697 + +0.8 4,658,698 - +1.3 4,659,015 + Pf6N2E2_3990 0.18 +0.3 4,659,015 + Pf6N2E2_3990 0.18 +0.0
Or see this region's nucleotide sequence