Experiment: acetate 80 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1156 and Pf6N2E2_1157 are separated by 39 nucleotides Pf6N2E2_1157 and Pf6N2E2_1158 are separated by 92 nucleotides Pf6N2E2_1158 and Pf6N2E2_1159 are separated by 250 nucleotides
Pf6N2E2_1156 - hypothetical protein, at 1,353,678 to 1,354,211
_1156
Pf6N2E2_1157 - hypothetical protein possibly connected to lactam utilization and allophanate hydrolase, at 1,354,251 to 1,355,042
_1157
Pf6N2E2_1158 - Cyn operon transcriptional activator, at 1,355,135 to 1,356,082
_1158
Pf6N2E2_1159 - Sialic acid transporter (permease) NanT, at 1,356,333 to 1,357,628
_1159
Position (kb)
1355
1356
1357 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1354.180 kb on + strand at 1354.180 kb on + strand at 1354.180 kb on + strand at 1354.181 kb on - strand at 1354.253 kb on - strand at 1354.270 kb on - strand at 1354.350 kb on + strand, within Pf6N2E2_1157 at 1354.350 kb on + strand, within Pf6N2E2_1157 at 1354.408 kb on + strand, within Pf6N2E2_1157 at 1354.461 kb on + strand, within Pf6N2E2_1157 at 1354.762 kb on + strand, within Pf6N2E2_1157 at 1354.779 kb on + strand, within Pf6N2E2_1157 at 1354.780 kb on - strand, within Pf6N2E2_1157 at 1354.973 kb on - strand at 1355.109 kb on + strand at 1355.109 kb on + strand at 1355.130 kb on - strand at 1355.463 kb on + strand, within Pf6N2E2_1158 at 1355.463 kb on + strand, within Pf6N2E2_1158 at 1355.464 kb on - strand, within Pf6N2E2_1158 at 1355.464 kb on - strand, within Pf6N2E2_1158 at 1355.464 kb on - strand, within Pf6N2E2_1158 at 1355.477 kb on + strand, within Pf6N2E2_1158 at 1355.478 kb on - strand, within Pf6N2E2_1158 at 1355.551 kb on - strand, within Pf6N2E2_1158 at 1355.562 kb on + strand, within Pf6N2E2_1158 at 1355.562 kb on + strand, within Pf6N2E2_1158 at 1355.563 kb on - strand, within Pf6N2E2_1158 at 1355.789 kb on - strand, within Pf6N2E2_1158 at 1355.937 kb on - strand, within Pf6N2E2_1158 at 1356.038 kb on + strand at 1356.110 kb on + strand at 1356.110 kb on + strand at 1356.110 kb on + strand at 1356.111 kb on - strand at 1356.111 kb on - strand at 1356.111 kb on - strand at 1356.111 kb on - strand at 1356.171 kb on + strand at 1356.425 kb on + strand at 1356.425 kb on + strand at 1356.425 kb on + strand at 1356.425 kb on + strand at 1356.687 kb on + strand, within Pf6N2E2_1159 at 1356.687 kb on + strand, within Pf6N2E2_1159 at 1356.687 kb on + strand, within Pf6N2E2_1159 at 1356.687 kb on + strand, within Pf6N2E2_1159 at 1356.855 kb on + strand, within Pf6N2E2_1159 at 1356.856 kb on - strand, within Pf6N2E2_1159
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 80 mM remove 1,354,180 + +0.9 1,354,180 + +0.2 1,354,180 + +0.2 1,354,181 - +0.6 1,354,253 - -0.2 1,354,270 - -0.3 1,354,350 + Pf6N2E2_1157 0.12 +0.4 1,354,350 + Pf6N2E2_1157 0.12 -0.5 1,354,408 + Pf6N2E2_1157 0.20 -0.3 1,354,461 + Pf6N2E2_1157 0.27 +0.5 1,354,762 + Pf6N2E2_1157 0.65 -0.8 1,354,779 + Pf6N2E2_1157 0.67 -0.1 1,354,780 - Pf6N2E2_1157 0.67 +0.2 1,354,973 - -0.3 1,355,109 + +0.4 1,355,109 + -0.4 1,355,130 - +2.3 1,355,463 + Pf6N2E2_1158 0.35 -0.3 1,355,463 + Pf6N2E2_1158 0.35 +0.3 1,355,464 - Pf6N2E2_1158 0.35 -0.8 1,355,464 - Pf6N2E2_1158 0.35 +0.4 1,355,464 - Pf6N2E2_1158 0.35 +0.4 1,355,477 + Pf6N2E2_1158 0.36 -0.6 1,355,478 - Pf6N2E2_1158 0.36 -0.0 1,355,551 - Pf6N2E2_1158 0.44 +0.3 1,355,562 + Pf6N2E2_1158 0.45 -0.2 1,355,562 + Pf6N2E2_1158 0.45 -2.2 1,355,563 - Pf6N2E2_1158 0.45 +0.5 1,355,789 - Pf6N2E2_1158 0.69 -0.3 1,355,937 - Pf6N2E2_1158 0.85 -0.5 1,356,038 + -0.5 1,356,110 + +0.2 1,356,110 + +1.1 1,356,110 + -0.2 1,356,111 - -3.2 1,356,111 - +1.1 1,356,111 - -0.1 1,356,111 - +0.7 1,356,171 + +0.2 1,356,425 + -0.1 1,356,425 + -0.0 1,356,425 + -0.7 1,356,425 + +0.5 1,356,687 + Pf6N2E2_1159 0.27 +0.4 1,356,687 + Pf6N2E2_1159 0.27 +0.5 1,356,687 + Pf6N2E2_1159 0.27 +0.3 1,356,687 + Pf6N2E2_1159 0.27 -0.4 1,356,855 + Pf6N2E2_1159 0.40 +0.2 1,356,856 - Pf6N2E2_1159 0.40 +0.2
Or see this region's nucleotide sequence