Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS30755

Experiment: Growth at pH8 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH8 and (C) Trisodium citrate
2,830,928	+		PFLU_RS12540	0.60	-2.3
2,830,928	+		PFLU_RS12540	0.60	+1.0
2,830,928	+		PFLU_RS12540	0.60	-0.5
2,830,928	+		PFLU_RS12540	0.60	+0.2
2,830,928	+		PFLU_RS12540	0.60	+1.1
2,830,928	+		PFLU_RS12540	0.60	-0.2
2,830,928	+		PFLU_RS12540	0.60	-0.4
2,830,928	+		PFLU_RS12540	0.60	-0.8
2,830,928	+		PFLU_RS12540	0.60	+2.0
2,830,928	+		PFLU_RS12540	0.60	-1.0
2,830,928	+		PFLU_RS12540	0.60	+1.3
2,830,929	-		PFLU_RS12540	0.60	+0.2
2,830,929	-		PFLU_RS12540	0.60	-0.3
2,830,929	-		PFLU_RS12540	0.60	-2.3
2,830,929	-		PFLU_RS12540	0.60	+0.5
2,830,929	-		PFLU_RS12540	0.60	-2.4
2,830,929	-		PFLU_RS12540	0.60	+0.3
2,830,929	-		PFLU_RS12540	0.60	-0.5
2,830,929	-		PFLU_RS12540	0.60	+1.8
2,830,929	-		PFLU_RS12540	0.60	+1.6
2,830,929	-		PFLU_RS12540	0.60	-3.1
2,830,929	-		PFLU_RS12540	0.60	-0.5
2,830,929	-		PFLU_RS12540	0.60	-2.4
2,830,929	-		PFLU_RS12540	0.60	+0.5
2,830,929	-		PFLU_RS12540	0.60	-1.0
2,830,929	-		PFLU_RS12540	0.60	-0.7
2,830,929	-		PFLU_RS12540	0.60	-0.4
2,830,929	-		PFLU_RS12540	0.60	-0.3
2,830,929	-		PFLU_RS12540	0.60	-2.0
2,830,929	-		PFLU_RS12540	0.60	+2.8
2,831,021	+		PFLU_RS12540	0.67	-0.8
2,831,021	+		PFLU_RS12540	0.67	-1.4
2,831,021	+		PFLU_RS12540	0.67	+0.4
2,831,021	+		PFLU_RS12540	0.67	-0.8
2,831,021	+		PFLU_RS12540	0.67	-1.8
2,831,021	+		PFLU_RS12540	0.67	-2.2
2,831,022	-		PFLU_RS12540	0.67	-2.2
2,831,073	-		PFLU_RS12540	0.71	+1.5
2,831,105	+		PFLU_RS12540	0.73	+0.4
2,831,105	+		PFLU_RS12540	0.73	+1.8
2,831,105	+		PFLU_RS12540	0.73	+2.1
2,831,105	+		PFLU_RS12540	0.73	+0.9
2,831,105	+		PFLU_RS12540	0.73	-1.0
2,831,105	+		PFLU_RS12540	0.73	+0.2
2,831,106	-		PFLU_RS12540	0.73	+2.6
2,831,106	-		PFLU_RS12540	0.73	+2.4
2,831,106	-		PFLU_RS12540	0.73	+0.2
2,831,106	-		PFLU_RS12540	0.73	+0.2
2,831,107	+		PFLU_RS12540	0.74	+1.8
2,831,107	+		PFLU_RS12540	0.74	+2.2
2,831,107	+		PFLU_RS12540	0.74	-0.8
2,831,107	+		PFLU_RS12540	0.74	-1.0
2,831,107	+		PFLU_RS12540	0.74	-1.5
2,831,107	+		PFLU_RS12540	0.74	-1.0
2,831,108	-		PFLU_RS12540	0.74	-2.3
2,831,108	-		PFLU_RS12540	0.74	-1.1
2,831,108	-		PFLU_RS12540	0.74	-0.8
2,831,108	-		PFLU_RS12540	0.74	+2.4
2,831,108	-		PFLU_RS12540	0.74	-2.1
2,831,108	-		PFLU_RS12540	0.74	-1.3
2,831,108	-		PFLU_RS12540	0.74	-0.2
2,831,243	+		PFLU_RS12540	0.84	-0.5
2,831,244	-		PFLU_RS12540	0.84	+3.4
2,831,244	-		PFLU_RS12540	0.84	-2.4
2,831,341	+				+1.4
2,831,341	+				-1.3
2,831,342	-				-1.9
2,831,439	+				+2.3
2,831,440	-				-0.3
2,831,440	-				-1.7
2,831,447	+				-1.0
2,831,447	+				+0.0
2,831,447	+				+2.4
2,831,447	+				-1.0
2,831,447	+				-0.6
2,831,448	-				-0.2
2,831,495	+				-0.2
2,831,502	+				+0.8
2,831,502	+				+0.2
2,831,503	-				-1.2
2,831,503	-				+1.4
2,831,503	-				+1.6
2,831,533	+				+0.7
2,831,533	+				+2.3
2,831,533	+				+2.0
2,831,533	+				-0.8
2,831,533	+				-1.0
2,831,533	+				+0.6
2,831,533	+				+0.7
2,831,533	+				-1.2
2,831,533	+				-0.2
2,831,533	+				+0.3
2,831,533	+				+0.8
2,831,533	+				-1.0
2,831,533	+				+3.9
2,831,533	+				+2.3
2,831,533	+				-0.5
2,831,534	-				-1.2
2,831,534	-				+1.0
2,831,534	-				+0.1
2,831,534	-				-0.5
2,831,534	-				-0.5
2,831,534	-				-0.1
2,831,534	-				+1.8
2,831,534	-				-0.5
2,831,534	-				-0.4
2,831,534	-				+2.1
2,831,548	+				+0.4
2,831,608	+				-0.5
2,831,623	+				-1.5
2,831,623	+				+2.5
2,831,623	+				-1.9
2,831,625	+				-1.0
2,831,625	+				+2.4
2,831,625	+				+0.5
2,831,625	+				-0.2
2,831,625	+				+2.8
2,831,625	+				-0.2
2,831,625	+				+0.1
2,831,625	+				+0.0
2,831,625	+				-1.8
2,831,625	+				-0.5
2,831,625	+				+0.5
2,831,625	+				-3.0
2,831,625	+				-0.8
2,831,625	+				+2.5
2,831,625	+				-1.0
2,831,625	+				+0.2
2,831,625	+				-1.9
2,831,625	+				-1.5
2,831,625	+				+0.1
2,831,625	+				-1.9
2,831,625	+				+0.9
2,831,625	+				-0.7
2,831,626	-				-0.8
2,831,626	-				-0.5
2,831,626	-				-1.7
2,831,626	-				+1.0
2,831,626	-				-1.7
2,831,626	-				-2.7
2,831,626	-				-0.5
2,831,626	-				-0.2
2,831,626	-				-0.8
2,831,626	-				-0.2
2,831,626	-				+1.3
2,831,626	-				-2.0
2,831,626	-				+1.7
2,831,626	-				-1.5
2,831,626	-				-0.7
2,831,626	-				-0.5
2,831,626	-				+2.8
2,831,626	-				-0.2
2,831,626	-				+1.3
2,831,629	+				-0.5
2,831,629	+				+0.2
2,831,629	+				-1.8
2,831,629	+				+2.8
2,831,629	+				+0.2
2,831,629	+				-2.2
2,831,629	+				-2.1
2,831,629	+				-2.0
2,831,630	-				+1.9
2,831,630	-				-0.2
2,831,630	-				+1.2
2,831,630	-				-1.7
2,831,630	-				+1.0
2,831,630	-				-0.8
2,831,630	-				-0.4
2,831,630	-				-1.8
2,831,630	-				-0.5
2,831,653	+				-0.2
2,831,703	+				+2.6
2,831,718	+				-0.4
2,831,718	+				-0.3
2,831,719	-				+1.0
2,831,725	+				+1.5
2,831,725	+				-0.5
2,831,725	+				+1.9
2,831,725	+				+1.8
2,831,725	+				-0.8
2,831,725	+				-2.2
2,831,725	+				+0.8
2,831,726	-				+2.3
2,831,726	-				+1.6
2,831,726	-				-1.5
2,831,726	-				+3.2
2,831,726	-				-1.4
2,831,726	-				+0.8
2,831,726	-				+1.4
2,831,726	-				+0.4
2,831,726	-				-1.5
2,831,729	+				+1.5
2,831,729	+				-0.3
2,831,729	+				+5.1
2,831,729	+				+1.6
2,831,729	+				-1.0
2,831,729	+				+2.1
2,831,729	+				-1.5
2,831,729	+				+0.5
2,831,729	+				-0.4
2,831,729	+				-0.5
2,831,729	+				-0.8
2,831,729	+				-1.8
2,831,729	+				-1.7
2,831,729	+				-0.6
2,831,729	+				-1.4
2,831,729	+				+2.2
2,831,729	+				+0.2
2,831,729	+				+1.4
2,831,730	-				-1.8
2,831,730	-				-1.8
2,831,730	-				+0.5
2,831,730	-				-1.0
2,831,730	-				-1.2
2,831,730	-				-1.7
2,831,730	-				-1.2
2,831,730	-				-1.4
2,831,730	-				+0.6
2,831,730	-				+3.3
2,831,730	-				-0.0
2,831,730	-				+0.7
2,831,730	-				-0.8
2,831,730	-				-1.2
2,831,730	-				-1.9
2,831,730	-				-0.9
2,831,730	-				-1.0
2,831,730	-				-1.4
2,831,730	-				+0.6
2,831,730	-				-1.4
2,831,730	-				+1.8
2,831,730	-				-1.4
2,831,732	+				-0.2
2,831,732	+				-0.7
2,831,732	+				-0.2
2,831,732	+				+0.3
2,831,732	+				+0.8
2,831,733	-				-2.1
2,831,759	+				+0.2
2,831,759	+				+2.8
2,831,760	-				-2.0
2,831,760	-				+0.8
2,831,766	+				+2.2
2,831,766	+				+1.2
2,831,766	+				-0.2
2,831,766	+				-0.2
2,831,766	+				+2.8
2,831,766	+				+3.7
2,831,766	+				-0.5
2,831,766	+				+1.5
2,831,766	+				-1.0
2,831,766	+				+1.1
2,831,766	+				+1.0
2,831,767	-				+1.4
2,831,767	-				+1.8
2,831,767	-				-0.2
2,831,767	-				-0.5
2,831,767	-				-2.0
2,831,767	-				-1.2
2,831,767	-				-0.8
2,831,779	+				-1.0
2,831,779	+				+0.2
2,831,791	+				-1.7
2,831,792	-				-2.2
2,831,808	+				-0.7
2,831,808	+				-0.2
2,831,808	+				+2.5
2,831,809	-				-2.2
2,831,817	+				-1.7
2,831,818	-				+2.8
2,831,818	-				+0.3
2,831,852	+				-1.2
2,831,852	+				+0.5
2,831,852	+				-1.5
2,831,853	-				+2.0
2,831,853	-				+2.9
2,831,853	-				+3.0
2,831,853	-				-0.5
2,831,857	-				-2.5
2,831,867	-				-0.8
2,831,905	+				+2.7
2,831,905	+				-1.2
2,831,906	-				+0.8
2,831,906	-				-1.2
2,831,906	-				+0.2
2,831,969	-				-0.2
2,832,042	-		PFLU_RS30755	0.12	-2.3
2,832,057	-		PFLU_RS30755	0.14	-1.7
2,832,063	+		PFLU_RS30755	0.14	+3.6
2,832,064	-		PFLU_RS30755	0.14	-0.6
2,832,091	-		PFLU_RS30755	0.16	+0.1
2,832,091	-		PFLU_RS30755	0.16	-1.4
2,832,142	+		PFLU_RS30755	0.20	+1.2
2,832,142	+		PFLU_RS30755	0.20	-0.5
2,832,143	-		PFLU_RS30755	0.20	-0.8
2,832,143	-		PFLU_RS30755	0.20	-1.1
2,832,143	-		PFLU_RS30755	0.20	-0.4
2,832,155	-		PFLU_RS30755	0.21	+0.2
2,832,232	-		PFLU_RS30755	0.27	+2.9
2,832,232	-		PFLU_RS30755	0.27	-1.8
2,832,232	-		PFLU_RS30755	0.27	+2.3
2,832,246	+		PFLU_RS30755	0.29	-2.1
2,832,280	+		PFLU_RS30755	0.31	-1.8
2,832,285	+		PFLU_RS30755	0.32	-0.5
2,832,285	+		PFLU_RS30755	0.32	+0.4
2,832,286	-		PFLU_RS30755	0.32	+0.4
2,832,286	-		PFLU_RS30755	0.32	-2.4
2,832,286	-		PFLU_RS30755	0.32	+0.7
2,832,286	-		PFLU_RS30755	0.32	+1.7
2,832,286	-		PFLU_RS30755	0.32	+2.5
2,832,286	-		PFLU_RS30755	0.32	-0.8
2,832,286	-		PFLU_RS30755	0.32	-0.5
2,832,286	-		PFLU_RS30755	0.32	-0.2
2,832,366	+		PFLU_RS30755	0.38	+0.7
2,832,366	+		PFLU_RS30755	0.38	-2.2
2,832,366	+		PFLU_RS30755	0.38	-0.6
2,832,366	+		PFLU_RS30755	0.38	-1.5
2,832,367	-		PFLU_RS30755	0.38	-2.5
2,832,367	-		PFLU_RS30755	0.38	-1.5
2,832,367	-		PFLU_RS30755	0.38	-0.2
2,832,367	-		PFLU_RS30755	0.38	-1.0
2,832,367	-		PFLU_RS30755	0.38	+1.8
2,832,410	+		PFLU_RS30755	0.42	+0.2
2,832,411	-		PFLU_RS30755	0.42	-1.9
2,832,411	-		PFLU_RS30755	0.42	-0.5
2,832,439	-		PFLU_RS30755	0.44	+2.2
2,832,547	-		PFLU_RS30755	0.53	+0.1
2,832,564	+		PFLU_RS30755	0.54	-1.2
2,832,570	+		PFLU_RS30755	0.54	-1.2
2,832,570	+		PFLU_RS30755	0.54	+0.5
2,832,570	+		PFLU_RS30755	0.54	-1.9
2,832,570	+		PFLU_RS30755	0.54	-2.1
2,832,570	+		PFLU_RS30755	0.54	-0.8
2,832,571	-		PFLU_RS30755	0.54	-1.8
2,832,571	-		PFLU_RS30755	0.54	+0.6
2,832,571	-		PFLU_RS30755	0.54	+2.9
2,832,617	+		PFLU_RS30755	0.58	-1.0
2,832,617	+		PFLU_RS30755	0.58	-0.7
2,832,617	+		PFLU_RS30755	0.58	+2.2
2,832,617	+		PFLU_RS30755	0.58	-1.4
2,832,617	+		PFLU_RS30755	0.58	+3.7
2,832,617	+		PFLU_RS30755	0.58	-0.9
2,832,618	-		PFLU_RS30755	0.58	-1.6
2,832,618	-		PFLU_RS30755	0.58	+1.0
2,832,625	+		PFLU_RS30755	0.59	+3.4
2,832,630	+		PFLU_RS30755	0.59	-1.9
2,832,630	+		PFLU_RS30755	0.59	+2.3
2,832,631	-		PFLU_RS30755	0.59	-1.8
2,832,651	+		PFLU_RS30755	0.61	+0.2
2,832,651	+		PFLU_RS30755	0.61	+1.3
2,832,652	-		PFLU_RS30755	0.61	-1.7
2,832,652	-		PFLU_RS30755	0.61	+2.4
2,832,652	-		PFLU_RS30755	0.61	-1.0
2,832,652	-		PFLU_RS30755	0.61	-1.0
2,832,652	-		PFLU_RS30755	0.61	-1.9
2,832,652	-		PFLU_RS30755	0.61	+0.8
2,832,675	-		PFLU_RS30755	0.63	+0.2
2,832,703	+		PFLU_RS30755	0.65	-0.0
2,832,704	-		PFLU_RS30755	0.65	-0.5
2,832,704	-		PFLU_RS30755	0.65	-1.8
2,832,704	-		PFLU_RS30755	0.65	+2.5
2,832,704	-		PFLU_RS30755	0.65	-1.4
2,832,704	-		PFLU_RS30755	0.65	-0.2
2,832,730	+		PFLU_RS30755	0.67	-1.4
2,832,731	-		PFLU_RS30755	0.67	+1.0
2,832,731	-		PFLU_RS30755	0.67	-2.0
2,832,870	+		PFLU_RS30755	0.78	+1.3
2,832,870	+		PFLU_RS30755	0.78	+0.2
2,832,870	+		PFLU_RS30755	0.78	+3.6
2,832,870	+		PFLU_RS30755	0.78	-1.0
2,832,870	+		PFLU_RS30755	0.78	-1.7
2,832,870	+		PFLU_RS30755	0.78	-0.2
2,832,870	+		PFLU_RS30755	0.78	+2.8
2,832,870	+		PFLU_RS30755	0.78	+2.6
2,832,870	+		PFLU_RS30755	0.78	+0.2
2,832,870	+		PFLU_RS30755	0.78	-0.5
2,832,870	+		PFLU_RS30755	0.78	-1.9
2,832,870	+		PFLU_RS30755	0.78	-0.2
2,832,870	+		PFLU_RS30755	0.78	-0.9
2,832,870	+		PFLU_RS30755	0.78	+0.5
2,832,870	+		PFLU_RS30755	0.78	-1.4
2,832,871	-		PFLU_RS30755	0.78	+0.6
2,832,871	-		PFLU_RS30755	0.78	-0.2
2,832,871	-		PFLU_RS30755	0.78	-2.9
2,832,871	-		PFLU_RS30755	0.78	-1.4
2,832,871	-		PFLU_RS30755	0.78	-0.9
2,832,871	-		PFLU_RS30755	0.78	+0.5
2,832,871	-		PFLU_RS30755	0.78	-1.0
2,832,871	-		PFLU_RS30755	0.78	+1.5
2,832,871	-		PFLU_RS30755	0.78	-0.2
2,832,871	-		PFLU_RS30755	0.78	+0.8
2,832,871	-		PFLU_RS30755	0.78	-1.5
2,832,871	-		PFLU_RS30755	0.78	-0.2
2,832,871	-		PFLU_RS30755	0.78	-2.0
2,832,871	-		PFLU_RS30755	0.78	-0.2
2,832,945	+		PFLU_RS30755	0.84	+1.8
2,832,945	+		PFLU_RS30755	0.84	+0.5
2,832,946	-		PFLU_RS30755	0.84	+3.6
2,832,946	-		PFLU_RS30755	0.84	+2.0
2,832,993	+		PFLU_RS30755	0.88	+0.4
2,832,994	-		PFLU_RS30755	0.88	-1.2
2,832,994	-		PFLU_RS30755	0.88	-0.8
2,833,039	+				+3.1
2,833,039	+				-1.5
2,833,039	+				+3.1
2,833,039	+				-1.5
2,833,039	+				-0.2
2,833,039	+				-0.5
2,833,039	+				+0.8
2,833,039	+				+3.3
2,833,040	-				-1.0
2,833,040	-				-2.4
2,833,040	-				-0.4
2,833,040	-				-0.2
2,833,040	-				-2.1
2,833,040	-				-1.5
2,833,040	-				-0.7
2,833,040	-				-1.0
2,833,044	+				+0.2
2,833,045	-				+0.5
2,833,045	-				-1.3
2,833,076	+				-0.8
2,833,076	+				-0.7
2,833,076	+				-2.4
2,833,076	+				-1.9
2,833,076	+				+4.0
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2,833,077	-				+4.1
2,833,087	+				+1.8
2,833,119	+				-0.8
2,833,119	+				+2.0
2,833,120	-				+1.0
2,833,120	-				+1.7
2,833,120	-				+3.1
2,833,120	-				+4.2
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2,833,132	+				+1.9
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2,833,135	-				+2.6
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2,833,135	-				-2.7
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2,833,152	+				-1.0
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2,833,153	-				+1.6
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2,833,153	-				-1.9
2,833,217	-				+0.8
2,833,254	-				-0.9
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2,833,262	+				+4.1
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2,833,263	-				+0.2
2,833,263	-				-1.8
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2,833,321	+				-2.4
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2,833,361	+		PFLU_RS12545	0.10	+3.1
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2,833,362	-		PFLU_RS12545	0.10	-2.0
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2,833,784	+		PFLU_RS12545	0.57	-0.8
2,833,784	+		PFLU_RS12545	0.57	+2.1
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2,833,794	+		PFLU_RS12545	0.59	-1.2
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2,833,795	-		PFLU_RS12545	0.59	+2.2
2,833,795	-		PFLU_RS12545	0.59	-2.4
2,833,843	+		PFLU_RS12545	0.64	+2.0
2,833,843	+		PFLU_RS12545	0.64	-0.9
2,833,843	+		PFLU_RS12545	0.64	-1.7
2,833,844	-		PFLU_RS12545	0.64	-1.5
2,833,871	+		PFLU_RS12545	0.67	+2.8
2,833,871	+		PFLU_RS12545	0.67	+0.7
2,833,871	+		PFLU_RS12545	0.67	+1.0
2,833,872	-		PFLU_RS12545	0.67	+0.0
2,833,872	-		PFLU_RS12545	0.67	-0.2
2,833,872	-		PFLU_RS12545	0.67	-1.7
2,833,998	+		PFLU_RS12545	0.81	+0.2
2,833,999	-		PFLU_RS12545	0.82	+5.1
2,833,999	-		PFLU_RS12545	0.82	-0.0