Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29590

Experiment: Growth at pH8 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH8 and (C) Trisodium citrate
6,568,241	+		PFLU_RS29585	0.70	-0.4
6,568,253	+		PFLU_RS29585	0.71	-0.9
6,568,254	-		PFLU_RS29585	0.71	-1.0
6,568,254	-		PFLU_RS29585	0.71	+0.1
6,568,513	+		PFLU_RS29585	0.79	+1.4
6,568,514	-		PFLU_RS29585	0.79	-0.1
6,568,514	-		PFLU_RS29585	0.79	+0.3
6,568,514	-		PFLU_RS29585	0.79	-1.7
6,568,540	+		PFLU_RS29585	0.80	+0.6
6,568,540	+		PFLU_RS29585	0.80	+3.3
6,568,541	-		PFLU_RS29585	0.80	+1.1
6,568,615	+		PFLU_RS29585	0.83	-1.4
6,568,615	+		PFLU_RS29585	0.83	-1.0
6,568,615	+		PFLU_RS29585	0.83	+2.9
6,568,615	+		PFLU_RS29585	0.83	-1.8
6,568,615	+		PFLU_RS29585	0.83	+1.2
6,568,615	+		PFLU_RS29585	0.83	-0.7
6,568,615	+		PFLU_RS29585	0.83	-1.8
6,568,616	-		PFLU_RS29585	0.83	-0.1
6,568,616	-		PFLU_RS29585	0.83	-0.0
6,568,616	-		PFLU_RS29585	0.83	-0.7
6,568,616	-		PFLU_RS29585	0.83	+0.2
6,568,616	-		PFLU_RS29585	0.83	-0.9
6,568,616	-		PFLU_RS29585	0.83	+0.5
6,568,616	-		PFLU_RS29585	0.83	-1.1
6,568,616	-		PFLU_RS29585	0.83	+0.6
6,568,616	-		PFLU_RS29585	0.83	+0.9
6,568,774	+		PFLU_RS29585	0.88	+0.9
6,568,774	+		PFLU_RS29585	0.88	-0.3
6,568,774	+		PFLU_RS29585	0.88	-1.9
6,568,774	+		PFLU_RS29585	0.88	-0.6
6,568,774	+		PFLU_RS29585	0.88	-0.7
6,568,775	-		PFLU_RS29585	0.88	-1.8
6,568,775	-		PFLU_RS29585	0.88	+2.6
6,568,775	-		PFLU_RS29585	0.88	-1.0
6,568,775	-		PFLU_RS29585	0.88	-0.3
6,568,775	-		PFLU_RS29585	0.88	-1.4
6,568,857	-				+2.6
6,568,871	-				+0.9
6,568,885	+				-1.0
6,568,885	+				+3.6
6,568,885	+				-0.7
6,568,885	+				-0.3
6,568,885	+				+3.8
6,568,885	+				-0.7
6,568,885	+				+0.1
6,568,885	+				+0.9
6,568,885	+				-1.3
6,568,885	+				+0.9
6,568,885	+				+3.2
6,568,885	+				-0.8
6,568,885	+				+0.9
6,568,885	+				+1.0
6,568,885	+				+2.2
6,568,885	+				+0.9
6,568,885	+				-1.0
6,568,885	+				-1.6
6,568,885	+				-2.8
6,568,885	+				+1.6
6,568,885	+				-0.4
6,568,885	+				-0.9
6,568,885	+				+1.3
6,568,885	+				-0.8
6,568,885	+				+1.9
6,568,885	+				+1.3
6,568,885	+				-2.3
6,568,885	+				+2.9
6,568,885	+				+1.3
6,568,885	+				-2.0
6,568,885	+				+2.1
6,568,885	+				-0.4
6,568,885	+				+0.9
6,568,885	+				+1.9
6,568,885	+				+3.6
6,568,886	-				-0.1
6,568,886	-				+1.4
6,568,886	-				+1.9
6,568,886	-				+1.6
6,568,886	-				+1.5
6,568,886	-				-1.2
6,568,886	-				-1.5
6,568,886	-				-2.7
6,568,886	-				+0.3
6,568,886	-				-1.6
6,568,886	-				-2.3
6,568,886	-				-0.3
6,568,886	-				+1.4
6,568,886	-				-0.4
6,568,886	-				-2.5
6,568,886	-				-1.9
6,568,886	-				+0.9
6,568,886	-				-1.4
6,568,886	-				+0.2
6,568,886	-				+1.2
6,568,886	-				-0.3
6,568,886	-				+3.3
6,568,886	-				+1.9
6,568,886	-				-0.7
6,568,886	-				-0.6
6,568,886	-				+0.6
6,568,886	-				-0.2
6,568,886	-				+0.9
6,568,886	-				-1.8
6,568,886	-				+2.8
6,568,886	-				-0.7
6,568,886	-				-0.4
6,568,888	+				+1.0
6,568,888	+				+1.4
6,568,888	+				+3.9
6,568,888	+				-1.5
6,568,888	+				+1.9
6,568,888	+				-1.1
6,568,888	+				-1.0
6,568,889	-				-0.4
6,568,889	-				+1.0
6,568,889	-				-0.1
6,568,889	-				+2.7
6,568,889	-				-1.4
6,568,889	-				+1.2
6,568,889	-				+0.6
6,568,958	+				+2.9
6,568,958	+				-2.5
6,568,958	+				-1.8
6,568,958	+				-0.3
6,568,959	-				-1.4
6,568,959	-				-0.3
6,569,062	+				-0.7
6,569,062	+				+1.1
6,569,062	+				+0.9
6,569,063	-				+0.6
6,569,063	-				-0.7
6,569,063	-				-0.0
6,569,063	-				+1.3
6,569,135	+				-1.6
6,569,136	-				+0.9
6,569,292	+		PFLU_RS29590	0.23	-2.0
6,569,292	+		PFLU_RS29590	0.23	+0.5
6,569,292	+		PFLU_RS29590	0.23	+2.2
6,569,292	+		PFLU_RS29590	0.23	-0.8
6,569,292	+		PFLU_RS29590	0.23	-2.1
6,569,292	+		PFLU_RS29590	0.23	+2.2
6,569,292	+		PFLU_RS29590	0.23	-0.9
6,569,292	+		PFLU_RS29590	0.23	-2.0
6,569,292	+		PFLU_RS29590	0.23	-2.0
6,569,292	+		PFLU_RS29590	0.23	-0.8
6,569,293	-		PFLU_RS29590	0.23	-2.2
6,569,293	-		PFLU_RS29590	0.23	+0.9
6,569,293	-		PFLU_RS29590	0.23	-0.7
6,569,293	-		PFLU_RS29590	0.23	-1.1
6,569,293	-		PFLU_RS29590	0.23	+0.9
6,569,293	-		PFLU_RS29590	0.23	-0.1
6,569,293	-		PFLU_RS29590	0.23	+0.1
6,569,293	-		PFLU_RS29590	0.23	-1.0
6,569,293	-		PFLU_RS29590	0.23	+0.5
6,569,293	-		PFLU_RS29590	0.23	-0.8
6,569,293	-		PFLU_RS29590	0.23	-1.9
6,569,371	+		PFLU_RS29590	0.34	-1.2
6,569,439	+		PFLU_RS29590	0.43	-1.6
6,569,439	+		PFLU_RS29590	0.43	-0.8
6,569,439	+		PFLU_RS29590	0.43	+3.7
6,569,439	+		PFLU_RS29590	0.43	-0.3
6,569,439	+		PFLU_RS29590	0.43	-2.4
6,569,439	+		PFLU_RS29590	0.43	-1.2
6,569,439	+		PFLU_RS29590	0.43	-0.7
6,569,439	+		PFLU_RS29590	0.43	+1.6
6,569,439	+		PFLU_RS29590	0.43	+0.4
6,569,439	+		PFLU_RS29590	0.43	-0.1
6,569,440	-		PFLU_RS29590	0.44	+2.0
6,569,440	-		PFLU_RS29590	0.44	-1.4
6,569,440	-		PFLU_RS29590	0.44	-0.3
6,569,440	-		PFLU_RS29590	0.44	+0.3
6,569,440	-		PFLU_RS29590	0.44	+0.8
6,569,487	+		PFLU_RS29590	0.50	+0.3
6,569,488	-		PFLU_RS29590	0.50	-2.1
6,569,488	-		PFLU_RS29590	0.50	+0.9
6,569,488	-		PFLU_RS29590	0.50	-1.9
6,569,549	+		PFLU_RS29590	0.59	-1.0
6,569,549	+		PFLU_RS29590	0.59	+0.9
6,569,550	-		PFLU_RS29590	0.59	+0.4
6,569,550	-		PFLU_RS29590	0.59	-0.3
6,569,550	-		PFLU_RS29590	0.59	-0.1
6,569,550	-		PFLU_RS29590	0.59	-2.2
6,569,554	+		PFLU_RS29590	0.59	+2.9
6,569,554	+		PFLU_RS29590	0.59	-0.9
6,569,555	-		PFLU_RS29590	0.60	-0.4
6,569,643	+		PFLU_RS29590	0.72	-0.7
6,569,643	+		PFLU_RS29590	0.72	+2.8
6,569,643	+		PFLU_RS29590	0.72	-0.7
6,569,644	-		PFLU_RS29590	0.72	-1.4
6,569,644	-		PFLU_RS29590	0.72	+3.0
6,569,644	-		PFLU_RS29590	0.72	+0.3
6,569,644	-		PFLU_RS29590	0.72	-0.2
6,569,644	-		PFLU_RS29590	0.72	+1.3
6,569,706	+		PFLU_RS29590	0.81	-0.2
6,569,706	+		PFLU_RS29590	0.81	-0.4
6,569,706	+		PFLU_RS29590	0.81	-1.5
6,569,706	+		PFLU_RS29590	0.81	-0.3
6,569,706	+		PFLU_RS29590	0.81	+2.7
6,569,706	+		PFLU_RS29590	0.81	+2.0
6,569,706	+		PFLU_RS29590	0.81	-1.4
6,569,706	+		PFLU_RS29590	0.81	-0.6
6,569,706	+		PFLU_RS29590	0.81	+1.6
6,569,706	+		PFLU_RS29590	0.81	+1.9
6,569,706	+		PFLU_RS29590	0.81	+0.4
6,569,706	+		PFLU_RS29590	0.81	-2.3
6,569,706	+		PFLU_RS29590	0.81	+1.6
6,569,706	+		PFLU_RS29590	0.81	-1.1
6,569,706	+		PFLU_RS29590	0.81	-0.6
6,569,706	+		PFLU_RS29590	0.81	-1.7
6,569,706	+		PFLU_RS29590	0.81	+0.8
6,569,706	+		PFLU_RS29590	0.81	-1.3
6,569,706	+		PFLU_RS29590	0.81	-1.1
6,569,706	+		PFLU_RS29590	0.81	+0.6
6,569,707	-		PFLU_RS29590	0.81	+1.2
6,569,707	-		PFLU_RS29590	0.81	+0.2
6,569,707	-		PFLU_RS29590	0.81	-0.4
6,569,707	-		PFLU_RS29590	0.81	-2.1
6,569,707	-		PFLU_RS29590	0.81	+0.1
6,569,707	-		PFLU_RS29590	0.81	-0.6
6,569,707	-		PFLU_RS29590	0.81	-1.0
6,569,707	-		PFLU_RS29590	0.81	-1.4
6,569,707	-		PFLU_RS29590	0.81	-0.4
6,569,707	-		PFLU_RS29590	0.81	-0.6
6,569,707	-		PFLU_RS29590	0.81	-0.4
6,569,707	-		PFLU_RS29590	0.81	+1.9
6,569,707	-		PFLU_RS29590	0.81	-1.3
6,569,707	-		PFLU_RS29590	0.81	+0.3
6,569,707	-		PFLU_RS29590	0.81	-2.3
6,569,707	-		PFLU_RS29590	0.81	+1.3
6,569,707	-		PFLU_RS29590	0.81	-1.6
6,569,707	-		PFLU_RS29590	0.81	+1.2
6,569,832	+				+4.4
6,569,833	-				+1.8
6,569,847	+				-0.9
6,569,847	+				+0.7
6,569,847	+				-0.7
6,569,847	+				+0.2
6,569,847	+				-2.2
6,569,847	+				+2.2
6,569,847	+				+1.1
6,569,847	+				+0.8
6,569,847	+				-0.6
6,569,847	+				-0.4
6,569,847	+				+0.0
6,569,848	-				+2.8
6,569,848	-				-1.4
6,569,848	-				-1.8
6,569,848	-				-0.9
6,569,848	-				+0.2
6,569,848	-				+3.9
6,569,848	-				+0.2
6,569,848	-				-1.1
6,569,848	-				-0.1
6,570,062	+		PFLU_RS29595	0.33	-2.5
6,570,062	+		PFLU_RS29595	0.33	-0.2
6,570,062	+		PFLU_RS29595	0.33	-1.0
6,570,063	-		PFLU_RS29595	0.33	+3.2
6,570,063	-		PFLU_RS29595	0.33	-1.9
6,570,063	-		PFLU_RS29595	0.33	+0.4
6,570,244	-		PFLU_RS29595	0.61	+3.3
6,570,345	+		PFLU_RS29595	0.76	-0.6
6,570,345	+		PFLU_RS29595	0.76	+0.8
6,570,345	+		PFLU_RS29595	0.76	-2.8
6,570,345	+		PFLU_RS29595	0.76	-1.9
6,570,345	+		PFLU_RS29595	0.76	-0.9
6,570,345	+		PFLU_RS29595	0.76	+1.3
6,570,345	+		PFLU_RS29595	0.76	-0.1
6,570,345	+		PFLU_RS29595	0.76	+0.8
6,570,346	-		PFLU_RS29595	0.76	+0.4
6,570,346	-		PFLU_RS29595	0.76	-0.2
6,570,346	-		PFLU_RS29595	0.76	-1.6
6,570,346	-		PFLU_RS29595	0.76	-0.1
6,570,346	-		PFLU_RS29595	0.76	-0.9
6,570,346	-		PFLU_RS29595	0.76	-0.1
6,570,346	-		PFLU_RS29595	0.76	-1.1
6,570,346	-		PFLU_RS29595	0.76	-0.3
6,570,346	-		PFLU_RS29595	0.76	-1.4
6,570,346	-		PFLU_RS29595	0.76	+0.4
6,570,346	-		PFLU_RS29595	0.76	+4.9
6,570,346	-		PFLU_RS29595	0.76	-0.8
6,570,346	-		PFLU_RS29595	0.76	-1.1
6,570,346	-		PFLU_RS29595	0.76	-0.9
6,570,481	-				+0.6
6,570,575	+				+2.4
6,570,576	-				-0.3
6,570,630	+				-0.9
6,570,748	-				-1.8
6,570,800	+				+0.2
6,570,800	+				+1.2
6,570,800	+				-1.3
6,570,800	+				+1.0
6,570,801	-				+1.3
6,570,843	+				+0.9
6,570,843	+				+1.9
6,570,844	-				+0.9
6,570,844	-				-0.6
6,570,844	-				-0.7