Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29575

Experiment: Growth at pH8 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH8 and (C) Trisodium citrate
6,563,294	+		PFLU_RS29570	0.43	+1.3
6,563,294	+		PFLU_RS29570	0.43	-0.1
6,563,294	+		PFLU_RS29570	0.43	-0.5
6,563,294	+		PFLU_RS29570	0.43	+0.2
6,563,294	+		PFLU_RS29570	0.43	-1.9
6,563,294	+		PFLU_RS29570	0.43	+0.5
6,563,294	+		PFLU_RS29570	0.43	+1.7
6,563,294	+		PFLU_RS29570	0.43	-0.2
6,563,294	+		PFLU_RS29570	0.43	-0.4
6,563,295	-		PFLU_RS29570	0.43	-0.4
6,563,295	-		PFLU_RS29570	0.43	+2.7
6,563,295	-		PFLU_RS29570	0.43	+1.4
6,563,295	-		PFLU_RS29570	0.43	-0.4
6,563,295	-		PFLU_RS29570	0.43	-1.6
6,563,295	-		PFLU_RS29570	0.43	-0.1
6,563,295	-		PFLU_RS29570	0.43	-1.8
6,563,295	-		PFLU_RS29570	0.43	+0.3
6,563,324	+		PFLU_RS29570	0.45	-0.4
6,563,324	+		PFLU_RS29570	0.45	+1.9
6,563,324	+		PFLU_RS29570	0.45	-1.4
6,563,324	+		PFLU_RS29570	0.45	-0.2
6,563,324	+		PFLU_RS29570	0.45	-1.0
6,563,325	-		PFLU_RS29570	0.45	+2.4
6,563,325	-		PFLU_RS29570	0.45	-1.6
6,563,325	-		PFLU_RS29570	0.45	-2.9
6,563,690	+		PFLU_RS29570	0.66	+3.1
6,563,690	+		PFLU_RS29570	0.66	-1.3
6,563,690	+		PFLU_RS29570	0.66	+1.3
6,563,690	+		PFLU_RS29570	0.66	+1.2
6,563,690	+		PFLU_RS29570	0.66	-0.8
6,563,690	+		PFLU_RS29570	0.66	+0.4
6,563,690	+		PFLU_RS29570	0.66	+0.9
6,563,690	+		PFLU_RS29570	0.66	+0.6
6,563,690	+		PFLU_RS29570	0.66	+0.9
6,563,691	-		PFLU_RS29570	0.66	-2.8
6,563,691	-		PFLU_RS29570	0.66	+2.3
6,563,691	-		PFLU_RS29570	0.66	-1.3
6,563,691	-		PFLU_RS29570	0.66	+3.6
6,563,691	-		PFLU_RS29570	0.66	+0.8
6,563,691	-		PFLU_RS29570	0.66	+1.8
6,563,691	-		PFLU_RS29570	0.66	+1.3
6,563,691	-		PFLU_RS29570	0.66	-2.1
6,563,711	+		PFLU_RS29570	0.67	+0.9
6,563,711	+		PFLU_RS29570	0.67	-1.4
6,563,711	+		PFLU_RS29570	0.67	+1.4
6,563,711	+		PFLU_RS29570	0.67	-0.3
6,563,711	+		PFLU_RS29570	0.67	-1.3
6,563,712	-		PFLU_RS29570	0.67	-0.7
6,563,712	-		PFLU_RS29570	0.67	-1.0
6,563,712	-		PFLU_RS29570	0.67	-0.7
6,563,850	-		PFLU_RS29570	0.75	-1.2
6,563,870	+		PFLU_RS29570	0.77	+1.9
6,563,870	+		PFLU_RS29570	0.77	+0.1
6,563,870	+		PFLU_RS29570	0.77	+1.6
6,563,870	+		PFLU_RS29570	0.77	+0.6
6,563,871	-		PFLU_RS29570	0.77	-1.6
6,563,871	-		PFLU_RS29570	0.77	+2.9
6,563,871	-		PFLU_RS29570	0.77	-1.6
6,563,885	+		PFLU_RS29570	0.77	-0.8
6,563,885	+		PFLU_RS29570	0.77	+1.1
6,563,885	+		PFLU_RS29570	0.77	+0.9
6,563,885	+		PFLU_RS29570	0.77	+1.5
6,563,885	+		PFLU_RS29570	0.77	-0.7
6,563,885	+		PFLU_RS29570	0.77	-0.6
6,563,885	+		PFLU_RS29570	0.77	+2.4
6,563,885	+		PFLU_RS29570	0.77	+0.3
6,563,885	+		PFLU_RS29570	0.77	+0.1
6,563,885	+		PFLU_RS29570	0.77	-0.0
6,563,886	-		PFLU_RS29570	0.78	+3.1
6,563,886	-		PFLU_RS29570	0.78	-0.7
6,563,886	-		PFLU_RS29570	0.78	-1.9
6,563,886	-		PFLU_RS29570	0.78	-1.4
6,563,886	-		PFLU_RS29570	0.78	-0.7
6,563,886	-		PFLU_RS29570	0.78	+1.6
6,563,886	-		PFLU_RS29570	0.78	-0.9
6,564,015	+		PFLU_RS29570	0.85	-2.6
6,564,015	+		PFLU_RS29570	0.85	-0.4
6,564,104	+				+0.1
6,564,104	+				+0.2
6,564,104	+				+1.5
6,564,104	+				+1.9
6,564,104	+				-0.1
6,564,104	+				+0.8
6,564,104	+				+0.7
6,564,105	-				+1.0
6,564,105	-				-2.3
6,564,105	-				-1.4
6,564,105	-				+1.1
6,564,105	-				-0.3
6,564,105	-				-0.6
6,564,105	-				+1.9
6,564,105	-				-0.7
6,564,105	-				-1.2
6,564,110	+				-0.8
6,564,199	+				+1.3
6,564,199	+				-1.1
6,564,199	+				-2.0
6,564,199	+				-1.5
6,564,199	+				-0.3
6,564,200	-				-0.9
6,564,200	-				-0.5
6,564,202	+				+0.2
6,564,202	+				+0.4
6,564,202	+				-0.6
6,564,203	-				+0.6
6,564,203	-				+0.8
6,564,203	-				+0.9
6,564,263	-				-0.1
6,564,263	-				+0.6
6,564,267	+				+0.0
6,564,267	+				-0.8
6,564,267	+				-1.6
6,564,267	+				-0.7
6,564,267	+				+1.9
6,564,267	+				-0.9
6,564,267	+				-2.3
6,564,267	+				+1.1
6,564,267	+				+1.5
6,564,267	+				-0.9
6,564,267	+				-0.3
6,564,267	+				+2.2
6,564,267	+				+1.0
6,564,267	+				-0.6
6,564,267	+				-1.1
6,564,267	+				-0.6
6,564,267	+				-2.3
6,564,267	+				-2.0
6,564,267	+				+1.0
6,564,267	+				+3.6
6,564,267	+				+0.3
6,564,267	+				+1.9
6,564,268	-				+1.6
6,564,268	-				+1.0
6,564,268	-				-0.7
6,564,268	-				+0.9
6,564,268	-				+1.9
6,564,268	-				+0.4
6,564,268	-				-0.8
6,564,268	-				+3.3
6,564,268	-				+2.5
6,564,268	-				-1.3
6,564,268	-				-0.7
6,564,268	-				-0.1
6,564,268	-				+1.9
6,564,268	-				-1.8
6,564,268	-				-1.2
6,564,268	-				+0.9
6,564,268	-				-0.0
6,564,268	-				-0.4
6,564,268	-				+1.9
6,564,268	-				-3.0
6,564,269	+				-2.6
6,564,269	+				+0.9
6,564,269	+				-1.8
6,564,269	+				+0.1
6,564,269	+				-1.8
6,564,269	+				-0.8
6,564,269	+				-1.0
6,564,269	+				-1.0
6,564,269	+				-0.9
6,564,269	+				-1.3
6,564,269	+				+0.6
6,564,269	+				-2.1
6,564,269	+				+0.6
6,564,269	+				+4.2
6,564,269	+				-2.0
6,564,269	+				+2.9
6,564,269	+				-0.4
6,564,269	+				-1.0
6,564,269	+				+0.3
6,564,269	+				-2.4
6,564,269	+				+2.0
6,564,269	+				-1.4
6,564,269	+				-0.1
6,564,269	+				-1.2
6,564,269	+				+3.0
6,564,269	+				+3.1
6,564,269	+				+1.2
6,564,269	+				-0.3
6,564,269	+				+1.1
6,564,269	+				-1.4
6,564,269	+				+1.9
6,564,269	+				+2.1
6,564,270	-				+1.1
6,564,270	-				-0.2
6,564,270	-				-0.4
6,564,270	-				-0.8
6,564,270	-				-1.2
6,564,270	-				-0.8
6,564,270	-				-0.9
6,564,270	-				-1.5
6,564,270	-				-0.4
6,564,270	-				-1.3
6,564,270	-				-0.5
6,564,270	-				-2.2
6,564,270	-				+0.1
6,564,270	-				+0.1
6,564,270	-				+3.1
6,564,270	-				-2.0
6,564,270	-				+3.3
6,564,270	-				+1.2
6,564,270	-				+2.1
6,564,270	-				-1.5
6,564,270	-				-0.7
6,564,270	-				+0.7
6,564,270	-				-0.7
6,564,270	-				+1.6
6,564,399	+		PFLU_RS29575	0.11	+1.1
6,564,399	+		PFLU_RS29575	0.11	+1.9
6,564,400	-		PFLU_RS29575	0.11	-0.9
6,564,400	-		PFLU_RS29575	0.11	-1.0
6,564,400	-		PFLU_RS29575	0.11	-0.9
6,564,400	-		PFLU_RS29575	0.11	+0.2
6,564,422	+		PFLU_RS29575	0.13	+1.4
6,564,422	+		PFLU_RS29575	0.13	+0.7
6,564,422	+		PFLU_RS29575	0.13	-1.3
6,564,422	+		PFLU_RS29575	0.13	+0.5
6,564,422	+		PFLU_RS29575	0.13	+2.5
6,564,423	-		PFLU_RS29575	0.13	-0.4
6,564,423	-		PFLU_RS29575	0.13	-0.8
6,564,423	-		PFLU_RS29575	0.13	-0.8
6,564,423	-		PFLU_RS29575	0.13	-1.0
6,564,423	-		PFLU_RS29575	0.13	-0.1
6,564,423	-		PFLU_RS29575	0.13	+0.0
6,564,423	-		PFLU_RS29575	0.13	-0.4
6,564,423	-		PFLU_RS29575	0.13	-2.2
6,564,453	+		PFLU_RS29575	0.16	-0.4
6,564,453	+		PFLU_RS29575	0.16	+0.6
6,564,453	+		PFLU_RS29575	0.16	+1.6
6,564,454	-		PFLU_RS29575	0.16	-1.4
6,564,454	-		PFLU_RS29575	0.16	-2.5
6,564,492	+		PFLU_RS29575	0.19	+0.3
6,564,492	+		PFLU_RS29575	0.19	-0.1
6,564,492	+		PFLU_RS29575	0.19	+0.3
6,564,492	+		PFLU_RS29575	0.19	-1.1
6,564,493	-		PFLU_RS29575	0.19	-1.3
6,564,493	-		PFLU_RS29575	0.19	-0.6
6,564,493	-		PFLU_RS29575	0.19	-2.1
6,564,777	+		PFLU_RS29575	0.43	+0.9
6,564,777	+		PFLU_RS29575	0.43	-0.4
6,564,795	+		PFLU_RS29575	0.45	-2.6
6,564,868	-		PFLU_RS29575	0.51	-2.4
6,565,052	-		PFLU_RS29575	0.66	-1.6
6,565,199	+		PFLU_RS29575	0.79	+1.0
6,565,199	+		PFLU_RS29575	0.79	+1.9
6,565,199	+		PFLU_RS29575	0.79	+2.4
6,565,199	+		PFLU_RS29575	0.79	+2.7
6,565,199	+		PFLU_RS29575	0.79	-0.1
6,565,199	+		PFLU_RS29575	0.79	-0.4
6,565,199	+		PFLU_RS29575	0.79	-0.8
6,565,199	+		PFLU_RS29575	0.79	+0.4
6,565,199	+		PFLU_RS29575	0.79	-0.9
6,565,200	-		PFLU_RS29575	0.79	+0.1
6,565,200	-		PFLU_RS29575	0.79	+0.1
6,565,200	-		PFLU_RS29575	0.79	-0.4
6,565,200	-		PFLU_RS29575	0.79	+0.6
6,565,264	+		PFLU_RS29575	0.84	-1.5
6,565,265	-		PFLU_RS29575	0.84	+3.1
6,565,265	-		PFLU_RS29575	0.84	-0.0
6,565,312	+		PFLU_RS29575	0.88	-1.6
6,565,312	+		PFLU_RS29575	0.88	-0.7
6,565,334	+				+1.3
6,565,338	-				+0.9
6,565,338	-				+1.3
6,565,338	-				+1.3
6,565,338	-				-2.0
6,565,883	+		PFLU_RS29580	0.61	-0.7
6,565,883	+		PFLU_RS29580	0.61	+0.3
6,565,883	+		PFLU_RS29580	0.61	+0.4
6,565,883	+		PFLU_RS29580	0.61	-1.4
6,565,884	-		PFLU_RS29580	0.62	-1.0
6,565,884	-		PFLU_RS29580	0.62	+0.6
6,565,884	-		PFLU_RS29580	0.62	-0.3
6,565,884	-		PFLU_RS29580	0.62	+1.5
6,565,884	-		PFLU_RS29580	0.62	-0.4
6,566,182	+				-1.0
6,566,182	+				-0.3
6,566,182	+				+0.6
6,566,182	+				+1.9
6,566,182	+				+0.3
6,566,182	+				-1.2
6,566,182	+				-2.0
6,566,183	-				-1.0
6,566,183	-				-2.2
6,566,183	-				+0.2
6,566,251	+				-1.5
6,566,251	+				+2.0
6,566,251	+				+0.5
6,566,251	+				+0.6
6,566,252	-				-0.9
6,566,252	-				+0.7
6,566,252	-				+2.2
6,566,282	+				+3.5
6,566,372	-				-0.4
6,566,440	+				+1.6
6,566,440	+				+1.3
6,566,440	+				+0.1
6,566,440	+				-1.2
6,566,440	+				+2.3
6,566,440	+				+1.8
6,566,440	+				+2.4
6,566,440	+				-0.4
6,566,440	+				-1.4
6,566,441	-				-1.1
6,566,441	-				+2.8
6,566,441	-				-1.9
6,566,441	-				-0.9