Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22280

Experiment: Growth at pH8 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH8 and (C) Trisodium citrate
5,009,586	+				-0.3
5,009,586	+				+1.1
5,009,586	+				-2.9
5,009,586	+				-1.4
5,009,586	+				+0.7
5,009,586	+				+3.8
5,009,586	+				+0.7
5,009,586	+				+2.2
5,009,586	+				-1.5
5,009,586	+				+0.4
5,009,586	+				+0.3
5,009,587	-				+1.8
5,009,587	-				-2.6
5,009,587	-				+3.7
5,009,587	-				-0.8
5,009,587	-				+2.6
5,009,587	-				-1.4
5,009,587	-				-0.1
5,009,587	-				-0.7
5,009,587	-				+1.3
5,009,587	-				+3.7
5,009,587	-				-1.4
5,009,587	-				+1.1
5,009,587	-				+0.7
5,009,587	-				+3.3
5,009,639	+				-2.3
5,009,639	+				-1.1
5,009,639	+				+0.9
5,009,639	+				-2.1
5,009,639	+				+0.2
5,009,639	+				-0.2
5,009,639	+				+2.3
5,009,639	+				+0.5
5,009,639	+				-0.1
5,009,639	+				+0.5
5,009,639	+				+0.5
5,009,639	+				+3.1
5,009,639	+				-0.4
5,009,639	+				-1.3
5,009,639	+				+1.0
5,009,639	+				+3.5
5,009,639	+				-2.6
5,009,639	+				+1.3
5,009,639	+				-1.3
5,009,639	+				+1.3
5,009,639	+				+3.1
5,009,639	+				-2.4
5,009,639	+				-1.4
5,009,639	+				-2.5
5,009,639	+				+3.0
5,009,639	+				-0.9
5,009,639	+				-1.1
5,009,639	+				+5.4
5,009,639	+				-0.3
5,009,639	+				-0.8
5,009,639	+				+0.3
5,009,639	+				+0.3
5,009,639	+				-0.3
5,009,639	+				+2.7
5,009,639	+				+2.7
5,009,639	+				+3.8
5,009,639	+				-2.7
5,009,639	+				+1.4
5,009,639	+				-0.3
5,009,639	+				+2.1
5,009,639	+				-2.1
5,009,639	+				+0.3
5,009,639	+				+0.7
5,009,640	-				+0.5
5,009,640	-				-0.3
5,009,640	-				+0.3
5,009,640	-				+0.3
5,009,640	-				-0.9
5,009,640	-				+2.1
5,009,640	-				+0.3
5,009,640	-				+1.3
5,009,640	-				-0.6
5,009,640	-				+1.6
5,009,640	-				-1.9
5,009,640	-				+0.7
5,009,640	-				-0.7
5,009,640	-				-0.1
5,009,640	-				-0.3
5,009,640	-				+0.6
5,009,640	-				-2.1
5,009,640	-				-0.1
5,009,640	-				+3.3
5,009,640	-				+1.4
5,009,640	-				-2.2
5,009,640	-				-0.1
5,009,640	-				+0.3
5,009,640	-				+3.4
5,009,640	-				-0.5
5,009,640	-				-1.6
5,009,640	-				+3.9
5,009,640	-				-1.6
5,009,640	-				-1.9
5,009,640	-				-0.7
5,009,640	-				-0.1
5,009,640	-				-0.7
5,009,640	-				+1.3
5,009,640	-				-0.1
5,009,640	-				-1.3
5,009,640	-				-1.1
5,009,674	+				+0.4
5,009,674	+				-0.9
5,009,674	+				+2.1
5,009,674	+				-1.8
5,009,674	+				-1.5
5,009,674	+				-2.0
5,009,674	+				-0.1
5,009,674	+				-0.2
5,009,674	+				+1.7
5,009,674	+				-2.1
5,009,674	+				-1.1
5,009,674	+				+0.6
5,009,675	-				-1.2
5,009,675	-				+4.4
5,009,675	-				-1.6
5,009,675	-				+2.8
5,009,675	-				+1.5
5,009,675	-				+2.6
5,009,675	-				-1.3
5,009,675	-				-1.5
5,009,675	-				-0.9
5,009,675	-				-2.1
5,009,675	-				-0.2
5,009,675	-				+2.3
5,009,675	-				-0.7
5,009,675	-				+4.0
5,009,675	-				+0.5
5,009,675	-				+0.3
5,009,676	+				+1.4
5,009,677	-				+2.3
5,009,705	-				+1.5
5,009,783	+				-0.9
5,009,783	+				+2.1
5,009,783	+				+0.7
5,009,783	+				+3.0
5,009,784	-				-1.4
5,009,784	-				-0.2
5,009,784	-				+0.3
5,009,784	-				-0.2
5,009,784	-				-2.3
5,009,784	-				+3.0
5,009,784	-				+0.6
5,009,832	+				-2.3
5,009,832	+				+0.6
5,009,832	+				-0.9
5,009,832	+				-1.4
5,009,832	+				-1.5
5,009,832	+				+2.0
5,009,832	+				-0.5
5,009,832	+				-2.7
5,009,832	+				-2.5
5,009,832	+				-1.1
5,009,833	-				-0.7
5,009,833	-				+0.1
5,009,833	-				-1.4
5,009,833	-				-0.1
5,009,833	-				-0.7
5,009,833	-				-0.7
5,009,833	-				+0.6
5,009,833	-				-1.6
5,009,833	-				-0.5
5,009,833	-				+0.3
5,009,833	-				+1.3
5,009,883	+				+3.5
5,009,883	+				-3.3
5,009,883	+				-0.1
5,009,883	+				+0.7
5,009,884	-				-1.1
5,009,884	-				-1.8
5,009,884	-				-2.3
5,009,884	-				+0.3
5,009,884	-				-0.4
5,009,884	-				+3.0
5,009,884	-				+2.7
5,009,884	-				+2.7
5,009,891	+				+0.8
5,009,892	-				-2.1
5,009,892	-				-0.5
5,009,892	-				+0.6
5,009,904	+		PFLU_RS22270	0.12	+0.3
5,009,904	+		PFLU_RS22270	0.12	-1.4
5,009,904	+		PFLU_RS22270	0.12	+0.7
5,009,904	+		PFLU_RS22270	0.12	-0.4
5,009,904	+		PFLU_RS22270	0.12	+1.6
5,009,904	+		PFLU_RS22270	0.12	+1.5
5,009,904	+		PFLU_RS22270	0.12	-0.1
5,009,905	-		PFLU_RS22270	0.12	-0.3
5,009,905	-		PFLU_RS22270	0.12	+0.4
5,009,905	-		PFLU_RS22270	0.12	-1.1
5,009,905	-		PFLU_RS22270	0.12	-2.1
5,009,905	-		PFLU_RS22270	0.12	-1.2
5,009,905	-		PFLU_RS22270	0.12	+0.5
5,009,915	+		PFLU_RS22270	0.13	+4.9
5,009,915	+		PFLU_RS22270	0.13	-0.6
5,009,915	+		PFLU_RS22270	0.13	+3.3
5,009,916	-		PFLU_RS22270	0.13	+1.5
5,009,916	-		PFLU_RS22270	0.13	-1.8
5,009,916	-		PFLU_RS22270	0.13	-1.3
5,009,916	-		PFLU_RS22270	0.13	-1.1
5,009,976	+		PFLU_RS22270	0.23	+0.7
5,009,976	+		PFLU_RS22270	0.23	-0.5
5,009,977	-		PFLU_RS22270	0.23	-1.1
5,009,977	-		PFLU_RS22270	0.23	+1.8
5,009,977	-		PFLU_RS22270	0.23	+0.7
5,010,070	+		PFLU_RS22270	0.37	+0.3
5,010,070	+		PFLU_RS22270	0.37	-0.9
5,010,070	+		PFLU_RS22270	0.37	-2.7
5,010,071	-		PFLU_RS22270	0.37	-0.3
5,010,071	-		PFLU_RS22270	0.37	+0.1
5,010,071	-		PFLU_RS22270	0.37	+3.2
5,010,145	+		PFLU_RS22270	0.49	+0.7
5,010,145	+		PFLU_RS22270	0.49	-0.6
5,010,146	-		PFLU_RS22270	0.49	-2.0
5,010,146	-		PFLU_RS22270	0.49	-0.5
5,010,146	-		PFLU_RS22270	0.49	-1.1
5,010,146	-		PFLU_RS22270	0.49	-0.1
5,010,146	-		PFLU_RS22270	0.49	-1.5
5,010,146	-		PFLU_RS22270	0.49	+0.5
5,010,196	+		PFLU_RS22270	0.56	+2.5
5,010,196	+		PFLU_RS22270	0.56	+0.3
5,010,196	+		PFLU_RS22270	0.56	-2.7
5,010,196	+		PFLU_RS22270	0.56	-0.4
5,010,197	-		PFLU_RS22270	0.57	-2.0
5,010,197	-		PFLU_RS22270	0.57	+1.9
5,010,197	-		PFLU_RS22270	0.57	+3.3
5,010,197	-		PFLU_RS22270	0.57	+1.7
5,010,352	+		PFLU_RS22270	0.80	+1.5
5,010,353	-		PFLU_RS22270	0.80	+0.7
5,010,353	-		PFLU_RS22270	0.80	-2.1
5,010,353	-		PFLU_RS22270	0.80	-0.4
5,010,392	+		PFLU_RS22270	0.86	-0.3
5,010,392	+		PFLU_RS22270	0.86	-0.1
5,010,393	-		PFLU_RS22270	0.87	-1.7
5,010,393	-		PFLU_RS22270	0.87	+0.3
5,010,393	-		PFLU_RS22270	0.87	-1.5
5,010,393	-		PFLU_RS22270	0.87	+1.3
5,010,393	-		PFLU_RS22270	0.87	+0.5
5,010,396	+		PFLU_RS22270	0.87	+2.8
5,010,396	+		PFLU_RS22270	0.87	-1.3
5,010,396	+		PFLU_RS22270	0.87	+0.5
5,010,396	+		PFLU_RS22270	0.87	+0.5
5,010,396	+		PFLU_RS22270	0.87	+0.3
5,010,396	+		PFLU_RS22270	0.87	-1.4
5,010,396	+		PFLU_RS22270	0.87	+0.5
5,010,396	+		PFLU_RS22270	0.87	-2.4
5,010,396	+		PFLU_RS22270	0.87	-1.0
5,010,396	+		PFLU_RS22270	0.87	-0.5
5,010,396	+		PFLU_RS22270	0.87	+0.3
5,010,396	+		PFLU_RS22270	0.87	+0.2
5,010,396	+		PFLU_RS22270	0.87	-0.1
5,010,397	-		PFLU_RS22270	0.87	-1.6
5,010,397	-		PFLU_RS22270	0.87	-0.6
5,010,397	-		PFLU_RS22270	0.87	+3.0
5,010,397	-		PFLU_RS22270	0.87	-1.2
5,010,397	-		PFLU_RS22270	0.87	+1.3
5,010,397	-		PFLU_RS22270	0.87	+5.2
5,010,397	-		PFLU_RS22270	0.87	-0.5
5,010,397	-		PFLU_RS22270	0.87	-0.9
5,010,397	-		PFLU_RS22270	0.87	-1.7
5,010,397	-		PFLU_RS22270	0.87	+4.3
5,010,397	-		PFLU_RS22270	0.87	+3.0
5,010,397	-		PFLU_RS22270	0.87	-0.3
5,010,397	-		PFLU_RS22270	0.87	+3.9
5,010,433	+				+2.5
5,010,433	+				+0.9
5,010,434	-				+2.4
5,010,434	-				-1.5
5,010,434	-				-1.4
5,010,441	+				-0.3
5,010,441	+				+0.7
5,010,441	+				+2.3
5,010,441	+				-0.3
5,010,441	+				+0.5
5,010,441	+				+0.2
5,010,442	-				-0.7
5,010,442	-				-1.8
5,010,442	-				-1.7
5,010,562	-				+1.3
5,010,562	-				-0.8
5,010,562	-				-2.1
5,010,577	+				+2.3
5,010,596	-				+1.3
5,010,960	+		PFLU_RS22280	0.37	+2.5
5,010,960	+		PFLU_RS22280	0.37	-2.4
5,010,960	+		PFLU_RS22280	0.37	+1.4
5,010,961	-		PFLU_RS22280	0.37	+0.2
5,010,961	-		PFLU_RS22280	0.37	-1.8
5,010,961	-		PFLU_RS22280	0.37	+0.3
5,010,961	-		PFLU_RS22280	0.37	-1.9
5,011,108	+		PFLU_RS22280	0.49	+3.6
5,011,108	+		PFLU_RS22280	0.49	-0.1
5,011,120	+		PFLU_RS22280	0.50	+3.5
5,011,120	+		PFLU_RS22280	0.50	-2.5
5,011,120	+		PFLU_RS22280	0.50	-1.6
5,011,121	-		PFLU_RS22280	0.50	-1.4
5,011,121	-		PFLU_RS22280	0.50	+0.6
5,011,121	-		PFLU_RS22280	0.50	-1.8
5,011,456	+		PFLU_RS22280	0.77	-0.3
5,011,457	-		PFLU_RS22280	0.77	-2.8
5,011,457	-		PFLU_RS22280	0.77	+1.2
5,011,624	+				+3.1
5,011,624	+				-0.1
5,011,625	-				+0.1
5,011,625	-				+1.3
5,011,625	-				-1.1
5,011,685	+				+2.1
5,011,685	+				+1.5
5,011,685	+				-0.2
5,011,686	-				+1.0
5,011,686	-				-1.2
5,011,722	+				+2.9
5,011,722	+				-0.7
5,011,722	+				-1.5
5,011,722	+				-2.8
5,011,722	+				+1.5
5,011,722	+				-1.5
5,011,722	+				-2.1
5,011,722	+				+1.5
5,011,722	+				-0.5
5,011,722	+				+0.2
5,011,722	+				-1.7
5,011,723	-				+2.1
5,011,723	-				+1.4
5,011,723	-				+0.3
5,011,723	-				+2.1
5,011,723	-				-0.9
5,011,723	-				-0.7
5,011,723	-				-2.3
5,011,723	-				+0.3
5,011,723	-				-0.2
5,011,723	-				+2.6
5,011,723	-				+0.7
5,011,723	-				-0.1
5,011,723	-				-1.0
5,011,723	-				+1.3
5,011,763	+				-0.6
5,011,764	-				+3.1
5,011,764	-				-2.2
5,011,764	-				-0.4
5,011,776	+				+2.3
5,011,776	+				+0.2
5,011,776	+				-2.0
5,011,776	+				+3.7
5,011,776	+				+2.4
5,011,776	+				-1.7
5,011,776	+				-2.5
5,011,777	-				+0.4
5,011,777	-				-1.3
5,011,777	-				+0.3
5,011,777	-				-0.5
5,011,777	-				+1.5
5,011,777	-				-0.1
5,011,777	-				-1.2
5,011,784	+				+1.8
5,011,784	+				+0.4
5,011,785	-				-0.3
5,011,804	+				-2.1
5,011,879	+				+0.7
5,011,879	+				-1.4
5,011,879	+				+0.5
5,011,879	+				+1.5
5,011,879	+				-2.4
5,011,879	+				+1.3
5,011,879	+				-1.1
5,011,880	-				+2.3
5,011,880	-				+1.8
5,011,880	-				-1.1
5,011,880	-				+1.0
5,011,880	-				-1.5
5,011,911	+				+2.1
5,011,912	-				+0.8
5,011,912	-				-1.1
5,011,912	-				-1.6
5,011,925	-				-0.1
5,011,935	+				-2.1
5,011,935	+				-0.7
5,011,935	+				+0.3
5,011,935	+				-1.5
5,011,935	+				+2.6
5,011,935	+				-0.5
5,011,936	-				-0.5
5,011,936	-				-0.1
5,011,978	+				-0.1
5,011,978	+				-1.0
5,011,979	-				+3.1
5,011,979	-				-0.6
5,011,979	-				-0.5
5,011,979	-				+1.9
5,012,035	+				-1.5
5,012,036	-				+0.4
5,012,036	-				+1.4
5,012,053	+				-1.5
5,012,053	+				+0.7
5,012,053	+				-1.1
5,012,054	-				+0.1
5,012,054	-				-0.6
5,012,055	+				+0.7
5,012,055	+				+2.2
5,012,055	+				-0.1
5,012,055	+				-1.9
5,012,055	+				-2.1
5,012,055	+				-2.5
5,012,056	-				-2.2
5,012,056	-				+0.6
5,012,056	-				-0.5
5,012,056	-				-0.3
5,012,056	-				+2.0
5,012,056	-				-0.6
5,012,056	-				+1.2
5,012,056	-				-0.7
5,012,056	-				-0.4
5,012,056	-				+0.8
5,012,148	-				-2.1
5,012,188	+				+0.7
5,012,188	+				-0.8
5,012,188	+				+0.0
5,012,189	-				+0.2
5,012,189	-				-1.4
5,012,189	-				-0.3
5,012,191	+				-0.1
5,012,191	+				-0.5
5,012,191	+				+0.1
5,012,191	+				+1.9
5,012,191	+				-2.1
5,012,191	+				-0.3
5,012,191	+				-0.9
5,012,192	-				-2.0
5,012,192	-				+0.7
5,012,192	-				+2.2
5,012,192	-				+1.3
5,012,200	+				-0.2
5,012,219	+				+0.7
5,012,219	+				-1.6
5,012,219	+				+3.7
5,012,219	+				-0.7
5,012,229	+				-0.9
5,012,229	+				-2.2
5,012,229	+				-0.7
5,012,230	-				+1.6
5,012,230	-				-0.9
5,012,241	-				+0.0
5,012,241	-				-1.3
5,012,241	-				-0.1
5,012,241	-				-1.8
5,012,248	+				+1.5
5,012,287	-				+2.7
5,012,410	-		PFLU_RS22285	0.29	-1.1
5,012,410	-		PFLU_RS22285	0.29	+0.7
5,012,523	+		PFLU_RS22285	0.49	-1.3
5,012,523	+		PFLU_RS22285	0.49	+1.6
5,012,523	+		PFLU_RS22285	0.49	+3.0
5,012,523	+		PFLU_RS22285	0.49	-2.6
5,012,523	+		PFLU_RS22285	0.49	+1.6
5,012,523	+		PFLU_RS22285	0.49	-0.9
5,012,524	-		PFLU_RS22285	0.49	-1.5
5,012,524	-		PFLU_RS22285	0.49	-1.6
5,012,524	-		PFLU_RS22285	0.49	+0.7
5,012,524	-		PFLU_RS22285	0.49	-0.3
5,012,524	-		PFLU_RS22285	0.49	-1.2
5,012,534	+		PFLU_RS22285	0.51	+0.9
5,012,614	-		PFLU_RS22285	0.65	+0.3
5,012,667	+		PFLU_RS22285	0.74	-1.3
5,012,667	+		PFLU_RS22285	0.74	-1.5
5,012,667	+		PFLU_RS22285	0.74	-2.1
5,012,668	-		PFLU_RS22285	0.74	+0.7
5,012,668	-		PFLU_RS22285	0.74	-0.0
5,012,686	+		PFLU_RS22285	0.77	-0.2
5,012,686	+		PFLU_RS22285	0.77	-2.3
5,012,686	+		PFLU_RS22285	0.77	+1.2
5,012,686	+		PFLU_RS22285	0.77	-1.3
5,012,686	+		PFLU_RS22285	0.77	-2.4
5,012,686	+		PFLU_RS22285	0.77	-0.7
5,012,686	+		PFLU_RS22285	0.77	+0.6
5,012,686	+		PFLU_RS22285	0.77	-2.0
5,012,686	+		PFLU_RS22285	0.77	-0.7
5,012,686	+		PFLU_RS22285	0.77	+0.5
5,012,686	+		PFLU_RS22285	0.77	+0.3
5,012,686	+		PFLU_RS22285	0.77	-0.7
5,012,687	-		PFLU_RS22285	0.77	-0.0
5,012,687	-		PFLU_RS22285	0.77	+1.1
5,012,687	-		PFLU_RS22285	0.77	+0.5
5,012,687	-		PFLU_RS22285	0.77	-2.0
5,012,687	-		PFLU_RS22285	0.77	-0.8
5,012,687	-		PFLU_RS22285	0.77	+1.4
5,012,687	-		PFLU_RS22285	0.77	-0.5
5,012,687	-		PFLU_RS22285	0.77	-0.9
5,012,687	-		PFLU_RS22285	0.77	+2.5
5,012,687	-		PFLU_RS22285	0.77	-1.3
5,012,687	-		PFLU_RS22285	0.77	-0.9
5,012,687	-		PFLU_RS22285	0.77	-1.3
5,012,687	-		PFLU_RS22285	0.77	-1.6
5,012,708	+		PFLU_RS22285	0.81	+0.4
5,012,708	+		PFLU_RS22285	0.81	-0.5
5,012,708	+		PFLU_RS22285	0.81	+0.5
5,012,708	+		PFLU_RS22285	0.81	-0.9
5,012,708	+		PFLU_RS22285	0.81	+0.7
5,012,709	-		PFLU_RS22285	0.81	-0.3
5,012,709	-		PFLU_RS22285	0.81	-1.2
5,012,709	-		PFLU_RS22285	0.81	+0.2
5,012,709	-		PFLU_RS22285	0.81	-1.6
5,012,734	+		PFLU_RS22285	0.86	-0.5
5,012,734	+		PFLU_RS22285	0.86	-1.1
5,012,734	+		PFLU_RS22285	0.86	-0.1
5,012,735	-		PFLU_RS22285	0.86	-0.7
5,012,735	-		PFLU_RS22285	0.86	+3.4
5,012,735	-		PFLU_RS22285	0.86	-0.4
5,012,735	-		PFLU_RS22285	0.86	+2.4
5,012,735	-		PFLU_RS22285	0.86	-2.1