Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15655

Experiment: Growth at pH8 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH8 and (C) Trisodium citrate
3,516,641	+		PFLU_RS15650	0.48	+2.3
3,516,642	-		PFLU_RS15650	0.48	-2.4
3,516,685	+		PFLU_RS15650	0.51	-1.3
3,516,965	+		PFLU_RS15650	0.73	-2.4
3,516,965	+		PFLU_RS15650	0.73	-1.3
3,516,965	+		PFLU_RS15650	0.73	-0.5
3,516,965	+		PFLU_RS15650	0.73	+1.3
3,516,966	-		PFLU_RS15650	0.73	+1.3
3,516,966	-		PFLU_RS15650	0.73	-1.7
3,517,047	+		PFLU_RS15650	0.79	+1.7
3,517,047	+		PFLU_RS15650	0.79	+1.8
3,517,047	+		PFLU_RS15650	0.79	+0.3
3,517,047	+		PFLU_RS15650	0.79	+0.3
3,517,047	+		PFLU_RS15650	0.79	+1.3
3,517,047	+		PFLU_RS15650	0.79	+4.0
3,517,047	+		PFLU_RS15650	0.79	-0.6
3,517,047	+		PFLU_RS15650	0.79	-0.3
3,517,047	+		PFLU_RS15650	0.79	-0.6
3,517,047	+		PFLU_RS15650	0.79	-2.3
3,517,047	+		PFLU_RS15650	0.79	-1.8
3,517,047	+		PFLU_RS15650	0.79	-2.8
3,517,047	+		PFLU_RS15650	0.79	-0.7
3,517,047	+		PFLU_RS15650	0.79	+1.3
3,517,047	+		PFLU_RS15650	0.79	-2.6
3,517,047	+		PFLU_RS15650	0.79	-1.5
3,517,047	+		PFLU_RS15650	0.79	-1.7
3,517,047	+		PFLU_RS15650	0.79	+0.1
3,517,047	+		PFLU_RS15650	0.79	+0.9
3,517,047	+		PFLU_RS15650	0.79	-2.3
3,517,047	+		PFLU_RS15650	0.79	-1.2
3,517,048	-		PFLU_RS15650	0.79	+1.0
3,517,048	-		PFLU_RS15650	0.79	+1.1
3,517,048	-		PFLU_RS15650	0.79	+0.1
3,517,048	-		PFLU_RS15650	0.79	+0.9
3,517,048	-		PFLU_RS15650	0.79	-1.3
3,517,048	-		PFLU_RS15650	0.79	-0.7
3,517,048	-		PFLU_RS15650	0.79	+1.1
3,517,048	-		PFLU_RS15650	0.79	+0.8
3,517,048	-		PFLU_RS15650	0.79	+0.8
3,517,048	-		PFLU_RS15650	0.79	+2.3
3,517,048	-		PFLU_RS15650	0.79	+1.4
3,517,048	-		PFLU_RS15650	0.79	-1.5
3,517,048	-		PFLU_RS15650	0.79	-2.5
3,517,048	-		PFLU_RS15650	0.79	+0.9
3,517,048	-		PFLU_RS15650	0.79	-0.1
3,517,316	+				-1.1
3,517,316	+				-1.1
3,517,316	+				-0.7
3,517,316	+				+0.5
3,517,316	+				-0.9
3,517,317	-				+0.3
3,517,372	-				+2.3
3,517,374	+				+1.5
3,517,374	+				+0.1
3,517,375	-				+2.1
3,517,375	-				+0.7
3,517,382	+				-1.1
3,517,382	+				-1.8
3,517,382	+				-0.7
3,517,382	+				-0.1
3,517,383	-				+0.3
3,517,383	-				-0.9
3,517,383	-				+0.4
3,517,383	-				-0.3
3,517,424	+				+0.7
3,517,425	-				-0.7
3,517,425	-				-0.7
3,517,425	-				+0.1
3,517,428	+				-0.1
3,517,428	+				+1.3
3,517,428	+				-1.1
3,517,429	-				-2.3
3,517,429	-				-0.4
3,517,429	-				+0.3
3,517,429	-				-2.6
3,517,559	+		PFLU_RS15655	0.10	-1.3
3,517,561	+		PFLU_RS15655	0.11	+0.5
3,517,561	+		PFLU_RS15655	0.11	+1.3
3,517,561	+		PFLU_RS15655	0.11	+0.7
3,517,561	+		PFLU_RS15655	0.11	-0.9
3,517,561	+		PFLU_RS15655	0.11	+3.9
3,517,561	+		PFLU_RS15655	0.11	-1.7
3,517,561	+		PFLU_RS15655	0.11	-0.9
3,517,562	-		PFLU_RS15655	0.11	+1.3
3,517,562	-		PFLU_RS15655	0.11	-0.1
3,517,562	-		PFLU_RS15655	0.11	+0.7
3,517,678	+		PFLU_RS15655	0.18	+1.3
3,517,678	+		PFLU_RS15655	0.18	+2.3
3,517,678	+		PFLU_RS15655	0.18	-0.3
3,517,679	-		PFLU_RS15655	0.18	+3.5
3,517,713	-		PFLU_RS15655	0.20	+0.1
3,517,713	-		PFLU_RS15655	0.20	-1.1
3,517,966	+		PFLU_RS15655	0.35	-0.3
3,517,966	+		PFLU_RS15655	0.35	-0.9
3,517,978	+		PFLU_RS15655	0.36	+1.7
3,518,036	+		PFLU_RS15655	0.39	+1.8
3,518,038	+		PFLU_RS15655	0.40	-1.5
3,518,038	+		PFLU_RS15655	0.40	-1.9
3,518,039	-		PFLU_RS15655	0.40	-2.2
3,518,105	+		PFLU_RS15655	0.44	+0.3
3,518,106	-		PFLU_RS15655	0.44	-1.7
3,518,106	-		PFLU_RS15655	0.44	-1.7
3,518,114	+		PFLU_RS15655	0.44	-0.7
3,518,114	+		PFLU_RS15655	0.44	-0.7
3,518,115	-		PFLU_RS15655	0.44	-1.0
3,518,117	+		PFLU_RS15655	0.44	+1.7
3,518,117	+		PFLU_RS15655	0.44	+3.1
3,518,117	+		PFLU_RS15655	0.44	-1.3
3,518,117	+		PFLU_RS15655	0.44	-1.1
3,518,118	-		PFLU_RS15655	0.44	+0.4
3,518,210	+		PFLU_RS15655	0.50	-2.0
3,518,210	+		PFLU_RS15655	0.50	+0.7
3,518,211	-		PFLU_RS15655	0.50	-1.1
3,518,211	-		PFLU_RS15655	0.50	-1.3
3,518,211	-		PFLU_RS15655	0.50	+0.1
3,518,436	+		PFLU_RS15655	0.64	-0.9
3,518,437	-		PFLU_RS15655	0.64	+0.7
3,518,448	+		PFLU_RS15655	0.65	+0.3
3,518,449	-		PFLU_RS15655	0.65	+3.3
3,518,510	+		PFLU_RS15655	0.68	+2.5
3,518,511	-		PFLU_RS15655	0.68	+1.0
3,518,588	+		PFLU_RS15655	0.73	-1.7
3,518,588	+		PFLU_RS15655	0.73	-1.3
3,518,588	+		PFLU_RS15655	0.73	-0.0
3,518,589	-		PFLU_RS15655	0.73	+0.9
3,518,596	+		PFLU_RS15655	0.74	-1.1
3,518,596	+		PFLU_RS15655	0.74	-1.6
3,518,597	-		PFLU_RS15655	0.74	-0.1
3,518,597	-		PFLU_RS15655	0.74	-0.1
3,518,597	-		PFLU_RS15655	0.74	+3.0
3,518,597	-		PFLU_RS15655	0.74	+0.7
3,518,625	-		PFLU_RS15655	0.75	+1.4
3,518,627	+		PFLU_RS15655	0.76	+4.2
3,518,627	+		PFLU_RS15655	0.76	-0.1
3,518,627	+		PFLU_RS15655	0.76	-0.9
3,518,627	+		PFLU_RS15655	0.76	+4.4
3,518,627	+		PFLU_RS15655	0.76	-1.7
3,518,628	-		PFLU_RS15655	0.76	-0.6
3,518,628	-		PFLU_RS15655	0.76	+3.6
3,518,628	-		PFLU_RS15655	0.76	-1.7
3,518,628	-		PFLU_RS15655	0.76	+2.7
3,518,628	-		PFLU_RS15655	0.76	-1.3
3,518,628	-		PFLU_RS15655	0.76	-1.3
3,518,679	+		PFLU_RS15655	0.79	-0.9
3,518,686	+		PFLU_RS15655	0.79	+5.5
3,518,846	+		PFLU_RS15655	0.89	+0.1
3,518,847	-		PFLU_RS15655	0.89	-0.7
3,518,847	-		PFLU_RS15655	0.89	+0.7
3,518,847	-		PFLU_RS15655	0.89	-1.8
3,518,847	-		PFLU_RS15655	0.89	+1.4
3,518,915	+				+0.7
3,519,102	+		PFLU_RS15660	0.11	-0.3
3,519,102	+		PFLU_RS15660	0.11	+0.2
3,519,102	+		PFLU_RS15660	0.11	+2.5
3,519,102	+		PFLU_RS15660	0.11	+0.3
3,519,166	+		PFLU_RS15660	0.22	+0.1
3,519,167	-		PFLU_RS15660	0.22	-0.9
3,519,220	+		PFLU_RS15660	0.31	-1.1
3,519,220	+		PFLU_RS15660	0.31	+1.7
3,519,309	+		PFLU_RS15660	0.47	+0.1
3,519,309	+		PFLU_RS15660	0.47	-1.1
3,519,309	+		PFLU_RS15660	0.47	+3.8
3,519,309	+		PFLU_RS15660	0.47	+0.1
3,519,309	+		PFLU_RS15660	0.47	-2.1
3,519,310	-		PFLU_RS15660	0.47	-1.9
3,519,310	-		PFLU_RS15660	0.47	+0.1
3,519,310	-		PFLU_RS15660	0.47	-0.0
3,519,310	-		PFLU_RS15660	0.47	-0.3
3,519,408	-		PFLU_RS15660	0.64	-0.3
3,519,412	+		PFLU_RS15660	0.65	-0.7
3,519,413	-		PFLU_RS15660	0.65	+3.3
3,519,413	-		PFLU_RS15660	0.65	-1.1
3,519,413	-		PFLU_RS15660	0.65	+3.1
3,519,486	+		PFLU_RS15660	0.77	+1.5
3,519,516	-		PFLU_RS15660	0.83	-0.7
3,519,561	+				-0.4
3,519,562	-				+0.7
3,519,562	-				+4.0
3,519,562	-				-1.0
3,519,564	+				+0.3
3,519,564	+				-0.7
3,519,564	+				-0.9
3,519,565	-				-1.5
3,519,600	-				-2.6
3,519,853	+				-0.2
3,519,853	+				+2.6
3,519,854	-				-1.9
3,519,854	-				-1.5
3,519,854	-				+0.9
3,519,854	-				-0.8
3,520,020	+		PFLU_RS15665	0.12	+0.7
3,520,020	+		PFLU_RS15665	0.12	+0.7
3,520,021	-		PFLU_RS15665	0.12	-0.3
3,520,021	-		PFLU_RS15665	0.12	-0.7
3,520,021	-		PFLU_RS15665	0.12	+1.7