Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15450

Experiment: Growth at pH8 and (C) Trisodium citrate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH8 and (C) Trisodium citrate
3,461,388	+				+0.1
3,461,469	+				-0.7
3,461,469	+				-1.8
3,461,483	+				+0.1
3,461,483	+				-0.4
3,461,484	-				-0.2
3,461,513	+		PFLU_RS15440	0.17	-0.4
3,461,513	+		PFLU_RS15440	0.17	+2.8
3,461,513	+		PFLU_RS15440	0.17	+1.6
3,461,582	+		PFLU_RS15440	0.35	-0.9
3,461,582	+		PFLU_RS15440	0.35	-2.3
3,461,582	+		PFLU_RS15440	0.35	-1.8
3,461,583	-		PFLU_RS15440	0.35	+0.4
3,461,583	-		PFLU_RS15440	0.35	+0.9
3,461,644	+		PFLU_RS15440	0.51	-0.5
3,461,645	-		PFLU_RS15440	0.51	-1.2
3,461,753	+		PFLU_RS15440	0.79	-0.5
3,461,753	+		PFLU_RS15440	0.79	+0.1
3,461,753	+		PFLU_RS15440	0.79	+3.3
3,461,754	-		PFLU_RS15440	0.79	-0.4
3,461,763	-		PFLU_RS15440	0.82	-0.7
3,461,806	+				+3.0
3,461,806	+				+2.6
3,461,807	-				-0.7
3,461,813	+				-0.8
3,461,851	+				+0.4
3,461,851	+				+1.9
3,461,851	+				-3.1
3,461,851	+				-1.5
3,461,851	+				-1.8
3,461,851	+				+2.7
3,461,851	+				-1.5
3,461,851	+				+1.8
3,461,852	-				+0.1
3,461,852	-				-2.4
3,461,852	-				-1.4
3,461,852	-				+1.6
3,461,852	-				-0.9
3,461,852	-				+1.3
3,461,852	-				-0.4
3,461,852	-				-0.5
3,461,852	-				+0.1
3,461,852	-				+1.9
3,461,864	+				-0.4
3,461,865	-				-1.2
3,461,865	-				-1.4
3,461,865	-				+1.5
3,461,872	+				+0.3
3,461,872	+				+2.6
3,461,873	-				-1.5
3,461,873	-				+1.3
3,461,873	-				+3.3
3,461,873	-				-1.7
3,461,893	+				+2.4
3,461,893	+				+0.2
3,461,893	+				+0.7
3,461,907	-				+3.1
3,461,936	+		PFLU_RS15445	0.13	-1.9
3,461,936	+		PFLU_RS15445	0.13	+0.2
3,461,936	+		PFLU_RS15445	0.13	+0.6
3,461,936	+		PFLU_RS15445	0.13	-0.4
3,461,936	+		PFLU_RS15445	0.13	-0.4
3,461,936	+		PFLU_RS15445	0.13	+0.1
3,461,936	+		PFLU_RS15445	0.13	-0.5
3,461,937	-		PFLU_RS15445	0.13	-0.8
3,461,937	-		PFLU_RS15445	0.13	+1.2
3,461,937	-		PFLU_RS15445	0.13	+1.6
3,461,937	-		PFLU_RS15445	0.13	-2.4
3,461,937	-		PFLU_RS15445	0.13	+2.1
3,461,937	-		PFLU_RS15445	0.13	+1.4
3,461,937	-		PFLU_RS15445	0.13	-0.1
3,461,937	-		PFLU_RS15445	0.13	+0.3
3,461,937	-		PFLU_RS15445	0.13	-0.7
3,461,937	-		PFLU_RS15445	0.13	+1.3
3,461,937	-		PFLU_RS15445	0.13	-0.8
3,461,937	-		PFLU_RS15445	0.13	+3.1
3,462,145	+		PFLU_RS15445	0.59	-1.7
3,462,145	+		PFLU_RS15445	0.59	+1.3
3,462,145	+		PFLU_RS15445	0.59	-1.5
3,462,145	+		PFLU_RS15445	0.59	-2.1
3,462,145	+		PFLU_RS15445	0.59	+0.8
3,462,145	+		PFLU_RS15445	0.59	-0.5
3,462,145	+		PFLU_RS15445	0.59	+0.2
3,462,145	+		PFLU_RS15445	0.59	-1.2
3,462,145	+		PFLU_RS15445	0.59	-0.7
3,462,145	+		PFLU_RS15445	0.59	-1.4
3,462,146	-		PFLU_RS15445	0.60	-0.8
3,462,146	-		PFLU_RS15445	0.60	+0.7
3,462,146	-		PFLU_RS15445	0.60	-2.7
3,462,146	-		PFLU_RS15445	0.60	+0.1
3,462,146	-		PFLU_RS15445	0.60	+1.9
3,462,146	-		PFLU_RS15445	0.60	-0.7
3,462,146	-		PFLU_RS15445	0.60	+0.4
3,462,146	-		PFLU_RS15445	0.60	-1.5
3,462,337	-				-1.4
3,462,380	+				-1.5
3,462,380	+				+2.0
3,462,380	+				-1.4
3,462,380	+				-0.4
3,462,380	+				-1.5
3,462,381	-				-0.7
3,462,578	-		PFLU_RS15450	0.34	-1.9
3,462,701	-		PFLU_RS15450	0.55	+1.6
3,462,707	+		PFLU_RS15450	0.56	-0.9
3,462,708	-		PFLU_RS15450	0.56	-0.9
3,462,766	+		PFLU_RS15450	0.66	+1.9
3,462,766	+		PFLU_RS15450	0.66	+4.5
3,462,767	-		PFLU_RS15450	0.66	-2.4
3,462,767	-		PFLU_RS15450	0.66	-0.2
3,462,795	+		PFLU_RS15450	0.71	+1.6
3,462,795	+		PFLU_RS15450	0.71	+0.8
3,462,795	+		PFLU_RS15450	0.71	-1.7
3,462,796	-		PFLU_RS15450	0.71	-0.7
3,462,796	-		PFLU_RS15450	0.71	+0.3
3,462,796	-		PFLU_RS15450	0.71	-0.7
3,462,796	-		PFLU_RS15450	0.71	-1.8
3,462,796	-		PFLU_RS15450	0.71	-0.7
3,462,796	-		PFLU_RS15450	0.71	-3.6
3,462,796	-		PFLU_RS15450	0.71	+2.6
3,462,903	+		PFLU_RS15450	0.90	-0.9
3,462,903	+		PFLU_RS15450	0.90	-2.8
3,462,904	-		PFLU_RS15450	0.90	-2.2
3,462,904	-		PFLU_RS15450	0.90	+1.0
3,462,904	-		PFLU_RS15450	0.90	+0.2
3,462,904	-		PFLU_RS15450	0.90	-1.5
3,462,925	-				-0.4
3,462,943	+				-1.8
3,462,960	+				+1.1
3,462,960	+				+0.4
3,462,960	+				-0.2
3,462,960	+				-1.4
3,462,960	+				-1.4
3,462,960	+				+0.6
3,462,960	+				-1.7
3,462,960	+				+1.6
3,462,960	+				+4.3
3,462,961	-				+1.4
3,462,961	-				-0.5
3,462,961	-				+0.5
3,462,961	-				-0.7
3,462,961	-				-1.7
3,462,961	-				+0.7
3,462,961	-				+0.1
3,463,016	+				-2.4
3,463,016	+				-2.4
3,463,017	-				+0.4
3,463,017	-				-2.4
3,463,017	-				-0.2
3,463,023	+				+0.1
3,463,023	+				-1.5
3,463,023	+				+0.1
3,463,023	+				+0.1
3,463,023	+				+1.2
3,463,023	+				+0.3
3,463,055	-				-1.1
3,463,073	+				-0.7
3,463,073	+				-1.4
3,463,073	+				+1.2
3,463,073	+				-0.7
3,463,073	+				-1.7
3,463,073	+				+0.1
3,463,073	+				-1.4
3,463,073	+				-2.1
3,463,073	+				+1.7
3,463,073	+				-1.7
3,463,073	+				-1.2
3,463,073	+				+1.4
3,463,074	-				-0.9
3,463,074	-				+0.2
3,463,074	-				-0.7
3,463,074	-				+2.8
3,463,074	-				+0.5
3,463,074	-				-2.4
3,463,074	-				-0.9
3,463,074	-				-1.2
3,463,074	-				-1.5
3,463,074	-				+0.1
3,463,146	-				-0.7
3,463,184	-				-0.9
3,463,207	+				-1.1
3,463,207	+				-1.2
3,463,207	+				+0.1
3,463,208	-				+0.1
3,463,208	-				-1.7
3,463,210	-				-0.7
3,463,264	+				-0.9
3,463,264	+				+0.6
3,463,264	+				+0.1
3,463,264	+				+0.1
3,463,264	+				-0.9
3,463,265	-				-0.9
3,463,265	-				-0.2
3,463,265	-				-1.9
3,463,265	-				-1.2
3,463,265	-				-1.5
3,463,265	-				+1.0
3,463,265	-				-0.4
3,463,271	+				-0.9
3,463,271	+				-1.8
3,463,271	+				+0.1
3,463,340	+				-1.3
3,463,340	+				+1.6
3,463,340	+				+0.1
3,463,340	+				-0.9
3,463,340	+				-1.9
3,463,340	+				-0.3
3,463,340	+				-1.2
3,463,341	-				-1.8
3,463,341	-				+0.1
3,463,341	-				-2.9
3,463,341	-				+1.8
3,463,341	-				-1.5
3,463,341	-				+2.2
3,463,341	-				+0.6
3,463,341	-				+1.5
3,463,341	-				-1.2
3,463,341	-				-0.4
3,463,341	-				-2.8
3,463,341	-				-2.1
3,463,341	-				-2.8
3,463,374	+		PFLU_RS15455	0.14	+1.6
3,463,550	+		PFLU_RS15455	0.38	+1.0
3,463,550	+		PFLU_RS15455	0.38	-1.2
3,463,550	+		PFLU_RS15455	0.38	-0.5
3,463,550	+		PFLU_RS15455	0.38	+3.0
3,463,550	+		PFLU_RS15455	0.38	-1.2
3,463,550	+		PFLU_RS15455	0.38	-1.8
3,463,550	+		PFLU_RS15455	0.38	+1.4
3,463,550	+		PFLU_RS15455	0.38	-0.9
3,463,551	-		PFLU_RS15455	0.38	-1.2
3,463,551	-		PFLU_RS15455	0.38	-2.6
3,463,551	-		PFLU_RS15455	0.38	-0.4
3,463,551	-		PFLU_RS15455	0.38	+0.4
3,463,551	-		PFLU_RS15455	0.38	-1.7
3,463,551	-		PFLU_RS15455	0.38	+1.3
3,463,551	-		PFLU_RS15455	0.38	-2.9
3,463,551	-		PFLU_RS15455	0.38	+1.5
3,463,551	-		PFLU_RS15455	0.38	-2.1
3,463,596	+		PFLU_RS15455	0.44	+1.2
3,463,662	-		PFLU_RS15455	0.53	-0.9
3,463,840	+		PFLU_RS15455	0.77	-0.4