Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05540

Experiment: H2 N-free with 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 10mM Ammonium chloride
1,035,744	-		MMJJ_RS05535	0.11	-2.5
1,035,744	-		MMJJ_RS05535	0.11	-1.0
1,035,745	+				+1.1
1,035,747	+		MMJJ_RS05535	0.11	-0.3
1,035,914	+		MMJJ_RS05535	0.29	-0.9
1,035,914	+		MMJJ_RS05535	0.29	-2.0
1,035,918	+		MMJJ_RS05535	0.29	-3.1
1,035,918	+		MMJJ_RS05535	0.29	-0.7
1,035,924	-		MMJJ_RS05535	0.30	-1.2
1,035,970	-		MMJJ_RS05535	0.34	-0.3
1,035,993	+		MMJJ_RS05535	0.37	-2.2
1,036,017	+		MMJJ_RS05535	0.39	+0.1
1,036,024	-		MMJJ_RS05535	0.40	+0.0
1,036,025	+		MMJJ_RS05535	0.40	-1.9
1,036,025	+		MMJJ_RS05535	0.40	+0.5
1,036,118	-		MMJJ_RS05535	0.50	-2.5
1,036,118	-		MMJJ_RS05535	0.50	+0.5
1,036,119	+		MMJJ_RS05535	0.50	-0.2
1,036,119	+		MMJJ_RS05535	0.50	-0.4
1,036,119	+		MMJJ_RS05535	0.50	-1.7
1,036,120	-		MMJJ_RS05535	0.50	-0.5
1,036,120	-		MMJJ_RS05535	0.50	-1.5
1,036,120	-		MMJJ_RS05535	0.50	-1.2
1,036,128	-		MMJJ_RS05535	0.51	-2.1
1,036,166	-		MMJJ_RS05535	0.55	-0.9
1,036,166	-		MMJJ_RS05535	0.55	-1.2
1,036,166	-		MMJJ_RS05535	0.55	-0.2
1,036,166	-		MMJJ_RS05535	0.55	-1.9
1,036,167	+		MMJJ_RS05535	0.55	-0.7
1,036,167	+		MMJJ_RS05535	0.55	-1.8
1,036,167	+		MMJJ_RS05535	0.55	-2.2
1,036,289	-		MMJJ_RS05535	0.68	-0.4
1,036,290	+		MMJJ_RS05535	0.68	+0.2
1,036,299	+		MMJJ_RS05535	0.69	-1.1
1,036,299	+		MMJJ_RS05535	0.69	-0.6
1,036,303	-		MMJJ_RS05535	0.70	-3.5
1,036,303	-		MMJJ_RS05535	0.70	-2.9
1,036,303	-		MMJJ_RS05535	0.70	-2.2
1,036,304	+		MMJJ_RS05535	0.70	-0.4
1,036,355	+		MMJJ_RS05535	0.75	-0.4
1,036,355	+		MMJJ_RS05535	0.75	-2.4
1,036,359	-		MMJJ_RS05535	0.76	-1.5
1,036,360	+		MMJJ_RS05535	0.76	-0.1
1,036,360	+		MMJJ_RS05535	0.76	-2.3
1,036,360	+		MMJJ_RS05535	0.76	-1.5
1,036,397	-		MMJJ_RS05535	0.80	-2.6
1,036,397	-		MMJJ_RS05535	0.80	+0.5
1,036,398	+				-0.2
1,036,444	-		MMJJ_RS05535	0.85	-3.3
1,036,444	-		MMJJ_RS05535	0.85	-1.5
1,036,444	-		MMJJ_RS05535	0.85	+0.5
1,036,472	-		MMJJ_RS05535	0.88	-0.1
1,036,472	-		MMJJ_RS05535	0.88	-0.7
1,036,497	+				-2.2
1,036,497	+				+0.2
1,036,508	-				-2.1
1,036,508	-				-0.3
1,036,508	-				-1.5
1,036,508	-				-1.5
1,036,508	-				+0.2
1,036,509	+				-0.4
1,036,509	+				-0.7
1,036,509	+				-0.9
1,036,614	-				-1.5
1,036,643	-				-1.4
1,036,654	-				-0.0
1,036,654	-				+1.6
1,036,655	+				+0.1
1,036,655	+				-0.1
1,036,656	-				-0.2
1,036,656	-				+0.4
1,036,657	+				+0.3
1,036,659	+				-2.4
1,036,673	+				-2.5
1,036,676	+				-1.2
1,036,686	-				-4.8
1,036,686	-				-2.4
1,036,686	-				-2.8
1,036,688	-				-2.3
1,036,700	-				-3.4
1,036,706	+				-4.5
1,036,706	+				-1.8
1,036,706	+				-1.2
1,036,706	+				-0.2
1,036,706	+				-1.1
1,036,706	+				-3.2
1,036,736	-				-1.1
1,036,753	+				-2.5
1,036,768	-				-2.4
1,036,769	+				+2.7
1,036,781	+				-2.1
1,036,818	-		MMJJ_RS05540	0.11	-1.5
1,036,818	-		MMJJ_RS05540	0.11	-1.9
1,036,828	-		MMJJ_RS05540	0.12	-2.3
1,036,828	-		MMJJ_RS05540	0.12	-2.0
1,036,828	-		MMJJ_RS05540	0.12	-2.7
1,036,828	-		MMJJ_RS05540	0.12	-3.1
1,036,828	-		MMJJ_RS05540	0.12	-0.9
1,036,829	+		MMJJ_RS05540	0.12	-2.6
1,036,829	+		MMJJ_RS05540	0.12	-0.8
1,036,829	+		MMJJ_RS05540	0.12	-1.5
1,036,829	+		MMJJ_RS05540	0.12	-1.7
1,036,829	+		MMJJ_RS05540	0.12	-0.8
1,036,829	+		MMJJ_RS05540	0.12	-0.9
1,036,829	+		MMJJ_RS05540	0.12	-2.1
1,036,829	+		MMJJ_RS05540	0.12	-2.8
1,036,829	+		MMJJ_RS05540	0.12	-1.8
1,036,829	+		MMJJ_RS05540	0.12	-1.2
1,036,830	-		MMJJ_RS05540	0.13	-0.1
1,036,830	-		MMJJ_RS05540	0.13	-0.9
1,036,830	-		MMJJ_RS05540	0.13	-1.4
1,036,831	+		MMJJ_RS05540	0.13	-4.6
1,036,893	-		MMJJ_RS05540	0.20	-1.2
1,036,894	+		MMJJ_RS05540	0.20	-3.4
1,036,894	+		MMJJ_RS05540	0.20	-1.8
1,036,945	-		MMJJ_RS05540	0.25	-3.8
1,036,946	+		MMJJ_RS05540	0.26	-1.7
1,036,947	-		MMJJ_RS05540	0.26	-1.5
1,036,947	-		MMJJ_RS05540	0.26	-1.6
1,036,947	-		MMJJ_RS05540	0.26	-3.6
1,036,951	-		MMJJ_RS05540	0.26	-1.6
1,036,951	-		MMJJ_RS05540	0.26	-2.7
1,036,951	-		MMJJ_RS05540	0.26	-1.0
1,036,952	+		MMJJ_RS05540	0.26	-2.7
1,036,998	-		MMJJ_RS05540	0.31	-4.0
1,037,017	-		MMJJ_RS05540	0.34	-1.6
1,037,017	-		MMJJ_RS05540	0.34	-1.5
1,037,018	+		MMJJ_RS05540	0.34	-1.1
1,037,018	+		MMJJ_RS05540	0.34	-1.2
1,037,018	+		MMJJ_RS05540	0.34	-2.3
1,037,037	-		MMJJ_RS05540	0.36	-4.0
1,037,037	-		MMJJ_RS05540	0.36	-1.4
1,037,038	+		MMJJ_RS05540	0.36	+0.7
1,037,038	+		MMJJ_RS05540	0.36	-1.7
1,037,038	+		MMJJ_RS05540	0.36	-5.3
1,037,038	+		MMJJ_RS05540	0.36	-2.0
1,037,038	+		MMJJ_RS05540	0.36	-1.7
1,037,041	+		MMJJ_RS05540	0.36	-1.2
1,037,041	+		MMJJ_RS05540	0.36	-2.3
1,037,047	-		MMJJ_RS05540	0.37	-1.5
1,037,048	+		MMJJ_RS05540	0.37	-1.4
1,037,049	-		MMJJ_RS05540	0.37	-3.1
1,037,049	-		MMJJ_RS05540	0.37	-1.8
1,037,049	-		MMJJ_RS05540	0.37	-2.3
1,037,049	-		MMJJ_RS05540	0.37	-2.7
1,037,050	+		MMJJ_RS05540	0.37	-3.1
1,037,050	+		MMJJ_RS05540	0.37	-2.2
1,037,053	-		MMJJ_RS05540	0.38	+0.0
1,037,053	-		MMJJ_RS05540	0.38	-2.8
1,037,053	-		MMJJ_RS05540	0.38	-0.5
1,037,060	-		MMJJ_RS05540	0.38	-0.6
1,037,060	-		MMJJ_RS05540	0.38	+1.1
1,037,061	+		MMJJ_RS05540	0.38	-1.4
1,037,062	-		MMJJ_RS05540	0.39	-2.3
1,037,062	-		MMJJ_RS05540	0.39	-1.7
1,037,062	-		MMJJ_RS05540	0.39	-2.5
1,037,062	-		MMJJ_RS05540	0.39	-1.8
1,037,063	+		MMJJ_RS05540	0.39	-1.9
1,037,063	+		MMJJ_RS05540	0.39	-2.6
1,037,063	+		MMJJ_RS05540	0.39	-1.4
1,037,072	-		MMJJ_RS05540	0.40	-1.5
1,037,101	-		MMJJ_RS05540	0.43	-2.9
1,037,151	-		MMJJ_RS05540	0.49	-0.7
1,037,151	-		MMJJ_RS05540	0.49	-2.1
1,037,151	-		MMJJ_RS05540	0.49	-3.2
1,037,151	-		MMJJ_RS05540	0.49	-0.0
1,037,152	+		MMJJ_RS05540	0.49	-0.8
1,037,152	+		MMJJ_RS05540	0.49	-2.8
1,037,152	+		MMJJ_RS05540	0.49	-2.1
1,037,167	-		MMJJ_RS05540	0.50	-2.0
1,037,167	-		MMJJ_RS05540	0.50	-2.1
1,037,184	+		MMJJ_RS05540	0.52	-0.6
1,037,197	+		MMJJ_RS05540	0.54	-4.3
1,037,210	+		MMJJ_RS05540	0.55	-1.0
1,037,218	+		MMJJ_RS05540	0.56	-4.4
1,037,223	-		MMJJ_RS05540	0.57	-4.4
1,037,223	-		MMJJ_RS05540	0.57	-0.9
1,037,223	-		MMJJ_RS05540	0.57	-2.8
1,037,223	-		MMJJ_RS05540	0.57	-3.0
1,037,224	+		MMJJ_RS05540	0.57	-3.2
1,037,224	+		MMJJ_RS05540	0.57	-0.9
1,037,275	-		MMJJ_RS05540	0.63	-1.7
1,037,275	-		MMJJ_RS05540	0.63	-2.8
1,037,275	-				+0.1
1,037,276	+		MMJJ_RS05540	0.63	-3.3
1,037,277	-		MMJJ_RS05540	0.63	-0.9
1,037,277	-		MMJJ_RS05540	0.63	-2.7
1,037,278	+		MMJJ_RS05540	0.63	-1.7
1,037,278	+		MMJJ_RS05540	0.63	-3.4
1,037,280	-		MMJJ_RS05540	0.63	-3.5
1,037,281	+		MMJJ_RS05540	0.63	-3.5
1,037,291	-		MMJJ_RS05540	0.64	-2.0
1,037,291	-		MMJJ_RS05540	0.64	-3.3
1,037,291	-		MMJJ_RS05540	0.64	-1.6
1,037,292	+		MMJJ_RS05540	0.64	-3.5
1,037,328	-		MMJJ_RS05540	0.68	-4.1
1,037,328	-		MMJJ_RS05540	0.68	-2.8
1,037,329	+		MMJJ_RS05540	0.69	-2.7
1,037,329	+		MMJJ_RS05540	0.69	-4.1
1,037,437	-		MMJJ_RS05540	0.81	-0.2
1,037,437	-		MMJJ_RS05540	0.81	-2.8
1,037,438	+		MMJJ_RS05540	0.81	-0.7
1,037,438	+		MMJJ_RS05540	0.81	+0.2
1,037,446	-		MMJJ_RS05540	0.82	+0.3
1,037,515	+		MMJJ_RS05540	0.89	-0.3
1,037,534	-				-1.2
1,037,534	-				-1.9
1,037,534	-				-2.9
1,037,535	+				-1.2
1,037,541	-				-2.7
1,037,575	+				-0.4
1,037,621	-				+1.2
1,037,621	-				+0.5
1,037,631	-				-0.7
1,037,631	-				+0.3
1,037,631	-				-0.8
1,037,631	-				-0.9
1,037,632	+				+0.1
1,037,632	+				+0.4
1,037,632	+				-0.5
1,037,632	+				-2.9
1,037,632	+				+0.2
1,037,633	-				-1.4
1,037,634	+				-0.5
1,037,634	+				-1.2
1,037,636	+				-0.9
1,037,701	+				-1.5
1,037,747	-				-1.5
1,038,473	+				+0.1
1,038,482	-				-1.9