Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06460 and H281DRAFT_06461 are separated by 544 nucleotides H281DRAFT_06461 and H281DRAFT_06462 are separated by 37 nucleotides H281DRAFT_06462 and H281DRAFT_06463 overlap by 7 nucleotides
H281DRAFT_06460: H281DRAFT_06460 - diguanylate phosphodiesterase, at 68,158 to 69,726
_06460
H281DRAFT_06461: H281DRAFT_06461 - hypothetical protein, at 70,271 to 70,558
_06461
H281DRAFT_06462: H281DRAFT_06462 - hypothetical protein, at 70,596 to 70,919
_06462
H281DRAFT_06463: H281DRAFT_06463 - transposase, IS4 family, at 70,913 to 72,034
_06463
Position (kb) 70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 69.640 kb on + strand at 69.641 kb on - strand at 69.641 kb on - strand at 69.724 kb on + strand at 69.815 kb on + strand at 69.816 kb on - strand at 69.816 kb on - strand at 70.023 kb on + strand at 70.024 kb on - strand at 70.116 kb on - strand at 70.139 kb on - strand at 70.341 kb on - strand, within H281DRAFT_06461 at 70.365 kb on - strand, within H281DRAFT_06461 at 70.413 kb on - strand, within H281DRAFT_06461 at 70.423 kb on + strand, within H281DRAFT_06461 at 70.423 kb on + strand, within H281DRAFT_06461 at 70.423 kb on + strand, within H281DRAFT_06461 at 70.423 kb on + strand, within H281DRAFT_06461 at 70.451 kb on + strand, within H281DRAFT_06461 at 70.452 kb on - strand, within H281DRAFT_06461 at 70.460 kb on + strand, within H281DRAFT_06461 at 70.460 kb on + strand, within H281DRAFT_06461 at 70.460 kb on + strand, within H281DRAFT_06461 at 70.460 kb on + strand, within H281DRAFT_06461 at 70.461 kb on - strand, within H281DRAFT_06461 at 70.461 kb on - strand, within H281DRAFT_06461 at 70.461 kb on - strand, within H281DRAFT_06461 at 70.461 kb on - strand, within H281DRAFT_06461 at 70.464 kb on + strand, within H281DRAFT_06461 at 70.465 kb on - strand, within H281DRAFT_06461 at 70.601 kb on - strand at 70.601 kb on - strand at 70.666 kb on - strand, within H281DRAFT_06462 at 70.666 kb on - strand, within H281DRAFT_06462 at 70.666 kb on - strand, within H281DRAFT_06462 at 70.895 kb on + strand at 70.951 kb on + strand at 71.080 kb on + strand, within H281DRAFT_06463 at 71.080 kb on + strand, within H281DRAFT_06463 at 71.326 kb on - strand, within H281DRAFT_06463 at 71.338 kb on - strand, within H281DRAFT_06463 at 71.400 kb on - strand, within H281DRAFT_06463 at 71.481 kb on + strand at 71.482 kb on - strand, within H281DRAFT_06463 at 71.482 kb on - strand, within H281DRAFT_06463 at 71.786 kb on + strand, within H281DRAFT_06463 at 71.787 kb on - strand, within H281DRAFT_06463 at 71.880 kb on + strand, within H281DRAFT_06463 at 71.881 kb on - strand, within H281DRAFT_06463 at 71.881 kb on - strand, within H281DRAFT_06463
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 69,640 + +0.3 69,641 - -0.1 69,641 - +0.4 69,724 + -0.3 69,815 + +1.1 69,816 - -0.2 69,816 - -0.3 70,023 + -2.8 70,024 - -0.6 70,116 - -0.7 70,139 - +0.1 70,341 - H281DRAFT_06461 0.24 -0.9 70,365 - H281DRAFT_06461 0.33 +0.3 70,413 - H281DRAFT_06461 0.49 +0.1 70,423 + H281DRAFT_06461 0.53 +0.1 70,423 + H281DRAFT_06461 0.53 +1.3 70,423 + H281DRAFT_06461 0.53 +0.6 70,423 + H281DRAFT_06461 0.53 -0.3 70,451 + H281DRAFT_06461 0.62 -0.1 70,452 - H281DRAFT_06461 0.63 +0.1 70,460 + H281DRAFT_06461 0.66 -1.3 70,460 + H281DRAFT_06461 0.66 +0.2 70,460 + H281DRAFT_06461 0.66 +0.7 70,460 + H281DRAFT_06461 0.66 +0.8 70,461 - H281DRAFT_06461 0.66 +0.3 70,461 - H281DRAFT_06461 0.66 +0.6 70,461 - H281DRAFT_06461 0.66 +0.4 70,461 - H281DRAFT_06461 0.66 -0.6 70,464 + H281DRAFT_06461 0.67 -1.0 70,465 - H281DRAFT_06461 0.67 +0.9 70,601 - +0.6 70,601 - -1.5 70,666 - H281DRAFT_06462 0.22 +0.8 70,666 - H281DRAFT_06462 0.22 +3.1 70,666 - H281DRAFT_06462 0.22 -1.7 70,895 + +0.4 70,951 + -0.3 71,080 + H281DRAFT_06463 0.15 +1.9 71,080 + H281DRAFT_06463 0.15 +0.1 71,326 - H281DRAFT_06463 0.37 +0.2 71,338 - H281DRAFT_06463 0.38 +0.7 71,400 - H281DRAFT_06463 0.43 -0.2 71,481 + +3.2 71,482 - H281DRAFT_06463 0.51 -1.0 71,482 - H281DRAFT_06463 0.51 -0.6 71,786 + H281DRAFT_06463 0.78 +0.1 71,787 - H281DRAFT_06463 0.78 +0.4 71,880 + H281DRAFT_06463 0.86 -0.7 71,881 - H281DRAFT_06463 0.86 -0.8 71,881 - H281DRAFT_06463 0.86 +0.0
Or see this region's nucleotide sequence