Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06333 and H281DRAFT_06334 overlap by 1 nucleotides H281DRAFT_06334 and H281DRAFT_06335 overlap by 4 nucleotides H281DRAFT_06335 and H281DRAFT_06336 are separated by 143 nucleotides
H281DRAFT_06333: H281DRAFT_06333 - peptide/nickel transport system ATP-binding protein, at 6,269 to 8,113
_06333
H281DRAFT_06334: H281DRAFT_06334 - peptide/nickel transport system permease protein, at 8,113 to 9,060
_06334
H281DRAFT_06335: H281DRAFT_06335 - peptide/nickel transport system permease protein, at 9,057 to 10,010
_06335
H281DRAFT_06336: H281DRAFT_06336 - peptide/nickel transport system substrate-binding protein, at 10,154 to 11,770
_06336
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 8.402 kb on + strand, within H281DRAFT_06334 at 8.441 kb on + strand, within H281DRAFT_06334 at 8.442 kb on - strand, within H281DRAFT_06334 at 8.502 kb on - strand, within H281DRAFT_06334 at 8.792 kb on + strand, within H281DRAFT_06334 at 8.793 kb on - strand, within H281DRAFT_06334 at 8.835 kb on - strand, within H281DRAFT_06334 at 8.835 kb on - strand, within H281DRAFT_06334 at 9.008 kb on + strand at 9.010 kb on + strand at 9.011 kb on - strand at 9.046 kb on - strand at 9.365 kb on - strand, within H281DRAFT_06335 at 9.499 kb on + strand, within H281DRAFT_06335 at 9.499 kb on + strand, within H281DRAFT_06335 at 10.156 kb on - strand at 10.241 kb on - strand at 10.242 kb on + strand at 10.665 kb on + strand, within H281DRAFT_06336 at 10.806 kb on + strand, within H281DRAFT_06336
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 8,402 + H281DRAFT_06334 0.30 -0.7 8,441 + H281DRAFT_06334 0.35 +3.4 8,442 - H281DRAFT_06334 0.35 +0.3 8,502 - H281DRAFT_06334 0.41 +0.3 8,792 + H281DRAFT_06334 0.72 +0.2 8,793 - H281DRAFT_06334 0.72 -0.1 8,835 - H281DRAFT_06334 0.76 +1.0 8,835 - H281DRAFT_06334 0.76 -1.8 9,008 + -0.2 9,010 + -0.5 9,011 - +0.4 9,046 - +0.2 9,365 - H281DRAFT_06335 0.32 -0.7 9,499 + H281DRAFT_06335 0.46 +0.3 9,499 + H281DRAFT_06335 0.46 -0.0 10,156 - +0.2 10,241 - -0.7 10,242 + -0.6 10,665 + H281DRAFT_06336 0.32 +0.2 10,806 + H281DRAFT_06336 0.40 +0.0
Or see this region's nucleotide sequence