Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06206 and H281DRAFT_06207 are separated by 441 nucleotides H281DRAFT_06207 and H281DRAFT_06208 are separated by 340 nucleotides
H281DRAFT_06206: H281DRAFT_06206 - 2-methylcitrate dehydratase PrpD, at 97,733 to 99,223
_06206
H281DRAFT_06207: H281DRAFT_06207 - Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit, at 99,665 to 100,237
_06207
H281DRAFT_06208: H281DRAFT_06208 - Sugar phosphate permease, at 100,578 to 101,780
_06208
Position (kb) 99
100
101 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 98.669 kb on + strand, within H281DRAFT_06206 at 98.669 kb on + strand, within H281DRAFT_06206 at 98.669 kb on + strand, within H281DRAFT_06206 at 98.669 kb on + strand, within H281DRAFT_06206 at 98.670 kb on - strand, within H281DRAFT_06206 at 98.670 kb on - strand, within H281DRAFT_06206 at 98.670 kb on - strand, within H281DRAFT_06206 at 98.775 kb on + strand, within H281DRAFT_06206 at 98.775 kb on + strand, within H281DRAFT_06206 at 98.776 kb on - strand, within H281DRAFT_06206 at 98.776 kb on - strand, within H281DRAFT_06206 at 98.776 kb on - strand, within H281DRAFT_06206 at 98.776 kb on - strand, within H281DRAFT_06206 at 98.776 kb on - strand at 98.852 kb on + strand at 98.852 kb on + strand, within H281DRAFT_06206 at 98.853 kb on - strand at 98.955 kb on + strand, within H281DRAFT_06206 at 98.955 kb on + strand, within H281DRAFT_06206 at 98.959 kb on + strand, within H281DRAFT_06206 at 98.960 kb on - strand, within H281DRAFT_06206 at 99.007 kb on + strand, within H281DRAFT_06206 at 99.008 kb on - strand, within H281DRAFT_06206 at 99.061 kb on + strand, within H281DRAFT_06206 at 99.061 kb on + strand, within H281DRAFT_06206 at 99.180 kb on + strand at 99.181 kb on - strand at 99.181 kb on - strand at 99.197 kb on - strand at 99.534 kb on - strand at 99.546 kb on + strand at 99.547 kb on - strand at 99.602 kb on + strand at 99.603 kb on - strand at 99.603 kb on - strand at 99.607 kb on + strand at 99.608 kb on - strand at 99.630 kb on - strand at 99.630 kb on - strand at 99.761 kb on + strand, within H281DRAFT_06207 at 99.762 kb on - strand, within H281DRAFT_06207 at 99.901 kb on + strand, within H281DRAFT_06207 at 99.904 kb on + strand, within H281DRAFT_06207 at 99.953 kb on - strand, within H281DRAFT_06207 at 99.973 kb on + strand, within H281DRAFT_06207 at 100.024 kb on + strand, within H281DRAFT_06207 at 100.025 kb on - strand, within H281DRAFT_06207 at 100.025 kb on - strand, within H281DRAFT_06207 at 100.025 kb on - strand, within H281DRAFT_06207 at 100.025 kb on - strand, within H281DRAFT_06207 at 100.025 kb on - strand, within H281DRAFT_06207 at 100.073 kb on + strand, within H281DRAFT_06207 at 100.074 kb on - strand, within H281DRAFT_06207 at 100.153 kb on - strand, within H281DRAFT_06207 at 100.153 kb on - strand, within H281DRAFT_06207 at 100.166 kb on + strand, within H281DRAFT_06207 at 100.166 kb on + strand, within H281DRAFT_06207 at 100.166 kb on + strand, within H281DRAFT_06207 at 100.176 kb on - strand, within H281DRAFT_06207 at 100.205 kb on + strand at 100.218 kb on + strand at 100.290 kb on - strand at 100.290 kb on - strand at 100.340 kb on + strand at 100.340 kb on + strand at 100.340 kb on + strand at 100.341 kb on - strand at 100.341 kb on - strand at 100.341 kb on - strand at 100.341 kb on - strand at 100.341 kb on - strand at 100.344 kb on + strand at 100.344 kb on + strand at 100.344 kb on + strand at 100.344 kb on + strand at 100.344 kb on + strand at 100.345 kb on - strand at 100.345 kb on - strand at 100.345 kb on - strand at 100.345 kb on - strand at 100.345 kb on - strand at 100.345 kb on - strand at 100.453 kb on + strand at 100.453 kb on + strand at 100.454 kb on - strand at 100.618 kb on + strand at 100.633 kb on + strand at 100.711 kb on + strand, within H281DRAFT_06208 at 100.823 kb on - strand, within H281DRAFT_06208 at 100.840 kb on + strand, within H281DRAFT_06208 at 100.898 kb on + strand, within H281DRAFT_06208 at 100.898 kb on + strand, within H281DRAFT_06208 at 100.898 kb on + strand, within H281DRAFT_06208 at 100.899 kb on - strand, within H281DRAFT_06208 at 100.900 kb on + strand, within H281DRAFT_06208 at 100.908 kb on - strand, within H281DRAFT_06208 at 100.908 kb on - strand, within H281DRAFT_06208 at 100.909 kb on + strand, within H281DRAFT_06208 at 100.910 kb on - strand, within H281DRAFT_06208 at 100.910 kb on - strand, within H281DRAFT_06208 at 100.929 kb on + strand, within H281DRAFT_06208 at 100.929 kb on + strand, within H281DRAFT_06208 at 100.930 kb on - strand, within H281DRAFT_06208 at 100.933 kb on + strand, within H281DRAFT_06208 at 101.021 kb on + strand, within H281DRAFT_06208 at 101.022 kb on - strand, within H281DRAFT_06208 at 101.023 kb on + strand, within H281DRAFT_06208 at 101.024 kb on - strand, within H281DRAFT_06208
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 98,669 + H281DRAFT_06206 0.63 +0.0 98,669 + H281DRAFT_06206 0.63 +0.4 98,669 + H281DRAFT_06206 0.63 -1.6 98,669 + H281DRAFT_06206 0.63 -0.2 98,670 - H281DRAFT_06206 0.63 +0.9 98,670 - H281DRAFT_06206 0.63 +0.1 98,670 - H281DRAFT_06206 0.63 -0.2 98,775 + H281DRAFT_06206 0.70 -0.4 98,775 + H281DRAFT_06206 0.70 +0.9 98,776 - H281DRAFT_06206 0.70 +0.2 98,776 - H281DRAFT_06206 0.70 -0.7 98,776 - H281DRAFT_06206 0.70 +0.9 98,776 - H281DRAFT_06206 0.70 -0.5 98,776 - +3.7 98,852 + +0.2 98,852 + H281DRAFT_06206 0.75 -0.1 98,853 - -0.5 98,955 + H281DRAFT_06206 0.82 -0.3 98,955 + H281DRAFT_06206 0.82 -1.3 98,959 + H281DRAFT_06206 0.82 +0.1 98,960 - H281DRAFT_06206 0.82 +0.8 99,007 + H281DRAFT_06206 0.85 -0.2 99,008 - H281DRAFT_06206 0.86 +0.3 99,061 + H281DRAFT_06206 0.89 +0.8 99,061 + H281DRAFT_06206 0.89 +0.2 99,180 + -0.4 99,181 - +0.2 99,181 - -0.8 99,197 - +0.2 99,534 - +1.1 99,546 + +1.6 99,547 - +1.3 99,602 + +0.4 99,603 - +0.0 99,603 - -0.1 99,607 + -1.2 99,608 - +0.8 99,630 - -1.2 99,630 - +0.1 99,761 + H281DRAFT_06207 0.17 +0.3 99,762 - H281DRAFT_06207 0.17 -0.0 99,901 + H281DRAFT_06207 0.41 +0.2 99,904 + H281DRAFT_06207 0.42 -0.3 99,953 - H281DRAFT_06207 0.50 -4.1 99,973 + H281DRAFT_06207 0.54 -0.9 100,024 + H281DRAFT_06207 0.63 -0.2 100,025 - H281DRAFT_06207 0.63 +0.3 100,025 - H281DRAFT_06207 0.63 +0.0 100,025 - H281DRAFT_06207 0.63 -0.6 100,025 - H281DRAFT_06207 0.63 +0.2 100,025 - H281DRAFT_06207 0.63 -1.0 100,073 + H281DRAFT_06207 0.71 -0.1 100,074 - H281DRAFT_06207 0.71 -0.2 100,153 - H281DRAFT_06207 0.85 -0.2 100,153 - H281DRAFT_06207 0.85 +0.3 100,166 + H281DRAFT_06207 0.87 +1.0 100,166 + H281DRAFT_06207 0.87 -0.1 100,166 + H281DRAFT_06207 0.87 +1.3 100,176 - H281DRAFT_06207 0.89 +0.1 100,205 + +0.4 100,218 + -0.5 100,290 - +0.6 100,290 - +0.6 100,340 + +0.1 100,340 + -0.3 100,340 + +0.2 100,341 - -0.2 100,341 - +0.5 100,341 - +0.6 100,341 - +0.5 100,341 - +1.7 100,344 + -0.4 100,344 + -0.9 100,344 + -0.1 100,344 + -0.1 100,344 + +1.2 100,345 - -0.9 100,345 - -1.1 100,345 - -0.1 100,345 - -0.7 100,345 - +0.0 100,345 - +0.6 100,453 + -0.3 100,453 + +0.1 100,454 - -0.5 100,618 + +0.1 100,633 + +2.6 100,711 + H281DRAFT_06208 0.11 +0.2 100,823 - H281DRAFT_06208 0.20 -0.7 100,840 + H281DRAFT_06208 0.22 -0.0 100,898 + H281DRAFT_06208 0.27 -0.0 100,898 + H281DRAFT_06208 0.27 +1.7 100,898 + H281DRAFT_06208 0.27 -0.6 100,899 - H281DRAFT_06208 0.27 +0.7 100,900 + H281DRAFT_06208 0.27 +0.1 100,908 - H281DRAFT_06208 0.27 -1.3 100,908 - H281DRAFT_06208 0.27 -0.3 100,909 + H281DRAFT_06208 0.28 +0.8 100,910 - H281DRAFT_06208 0.28 -0.2 100,910 - H281DRAFT_06208 0.28 -1.5 100,929 + H281DRAFT_06208 0.29 +0.0 100,929 + H281DRAFT_06208 0.29 -0.0 100,930 - H281DRAFT_06208 0.29 -0.2 100,933 + H281DRAFT_06208 0.30 +0.9 101,021 + H281DRAFT_06208 0.37 -1.4 101,022 - H281DRAFT_06208 0.37 +0.4 101,023 + H281DRAFT_06208 0.37 +0.1 101,024 - H281DRAFT_06208 0.37 -0.8
Or see this region's nucleotide sequence