Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06186 and H281DRAFT_06187 are separated by 159 nucleotides H281DRAFT_06187 and H281DRAFT_06188 are separated by 72 nucleotides
H281DRAFT_06186: H281DRAFT_06186 - Superfamily I DNA and RNA helicases, at 76,241 to 77,722
_06186
H281DRAFT_06187: H281DRAFT_06187 - hypothetical protein, at 77,882 to 78,349
_06187
H281DRAFT_06188: H281DRAFT_06188 - Site-specific recombinase XerD, at 78,422 to 79,405
_06188
Position (kb) 77
78
79 Strain fitness (log2 ratio) -2
-1
0
1 at 76.989 kb on + strand, within H281DRAFT_06186 at 76.989 kb on + strand, within H281DRAFT_06186 at 76.990 kb on - strand, within H281DRAFT_06186 at 76.990 kb on - strand, within H281DRAFT_06186 at 77.016 kb on + strand, within H281DRAFT_06186 at 77.016 kb on + strand, within H281DRAFT_06186 at 77.016 kb on + strand, within H281DRAFT_06186 at 77.017 kb on - strand, within H281DRAFT_06186 at 77.142 kb on + strand, within H281DRAFT_06186 at 77.142 kb on + strand, within H281DRAFT_06186 at 77.142 kb on + strand, within H281DRAFT_06186 at 77.142 kb on + strand, within H281DRAFT_06186 at 77.143 kb on - strand, within H281DRAFT_06186 at 77.202 kb on - strand, within H281DRAFT_06186 at 77.202 kb on - strand, within H281DRAFT_06186 at 77.640 kb on + strand at 77.655 kb on - strand at 77.722 kb on + strand at 77.779 kb on + strand at 77.779 kb on + strand at 77.779 kb on + strand at 77.780 kb on - strand at 77.780 kb on - strand at 77.780 kb on - strand at 77.896 kb on + strand at 77.897 kb on - strand at 77.900 kb on + strand at 77.901 kb on - strand at 77.901 kb on - strand at 77.901 kb on - strand at 77.901 kb on - strand at 77.901 kb on - strand at 77.942 kb on + strand, within H281DRAFT_06187 at 78.019 kb on + strand, within H281DRAFT_06187 at 78.019 kb on + strand, within H281DRAFT_06187 at 78.019 kb on + strand, within H281DRAFT_06187 at 78.020 kb on - strand, within H281DRAFT_06187 at 78.020 kb on - strand, within H281DRAFT_06187 at 78.020 kb on - strand, within H281DRAFT_06187 at 78.020 kb on - strand, within H281DRAFT_06187 at 78.020 kb on - strand, within H281DRAFT_06187 at 78.054 kb on + strand, within H281DRAFT_06187 at 78.055 kb on - strand, within H281DRAFT_06187 at 78.055 kb on - strand, within H281DRAFT_06187 at 78.342 kb on + strand at 78.343 kb on - strand at 78.351 kb on + strand at 78.351 kb on + strand at 78.351 kb on + strand at 78.351 kb on + strand at 78.352 kb on - strand at 78.352 kb on - strand at 78.352 kb on - strand at 78.544 kb on + strand, within H281DRAFT_06188 at 78.873 kb on - strand, within H281DRAFT_06188 at 78.927 kb on + strand at 78.928 kb on - strand, within H281DRAFT_06188 at 79.296 kb on + strand, within H281DRAFT_06188 at 79.297 kb on - strand, within H281DRAFT_06188 at 79.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 76,989 + H281DRAFT_06186 0.50 +1.2 76,989 + H281DRAFT_06186 0.50 +0.1 76,990 - H281DRAFT_06186 0.51 +1.0 76,990 - H281DRAFT_06186 0.51 +0.2 77,016 + H281DRAFT_06186 0.52 -0.7 77,016 + H281DRAFT_06186 0.52 -0.9 77,016 + H281DRAFT_06186 0.52 -0.4 77,017 - H281DRAFT_06186 0.52 -1.0 77,142 + H281DRAFT_06186 0.61 +0.5 77,142 + H281DRAFT_06186 0.61 +0.2 77,142 + H281DRAFT_06186 0.61 -0.6 77,142 + H281DRAFT_06186 0.61 -0.3 77,143 - H281DRAFT_06186 0.61 -0.6 77,202 - H281DRAFT_06186 0.65 +0.9 77,202 - H281DRAFT_06186 0.65 +1.1 77,640 + +0.6 77,655 - -2.4 77,722 + -1.8 77,779 + +0.4 77,779 + +0.6 77,779 + -0.3 77,780 - +0.5 77,780 - -0.2 77,780 - -0.3 77,896 + +0.3 77,897 - -1.2 77,900 + -0.1 77,901 - +0.5 77,901 - +0.6 77,901 - -2.0 77,901 - +0.0 77,901 - +0.4 77,942 + H281DRAFT_06187 0.13 -0.6 78,019 + H281DRAFT_06187 0.29 +0.1 78,019 + H281DRAFT_06187 0.29 +0.0 78,019 + H281DRAFT_06187 0.29 +1.1 78,020 - H281DRAFT_06187 0.29 +0.8 78,020 - H281DRAFT_06187 0.29 -0.4 78,020 - H281DRAFT_06187 0.29 -1.2 78,020 - H281DRAFT_06187 0.29 +0.0 78,020 - H281DRAFT_06187 0.29 +0.4 78,054 + H281DRAFT_06187 0.37 +0.8 78,055 - H281DRAFT_06187 0.37 +0.1 78,055 - H281DRAFT_06187 0.37 +0.7 78,342 + +0.4 78,343 - -0.0 78,351 + -1.0 78,351 + -0.2 78,351 + -0.1 78,351 + -0.3 78,352 - +0.7 78,352 - -0.0 78,352 - +0.4 78,544 + H281DRAFT_06188 0.12 -0.6 78,873 - H281DRAFT_06188 0.46 +1.6 78,927 + +1.4 78,928 - H281DRAFT_06188 0.51 -0.5 79,296 + H281DRAFT_06188 0.89 +1.7 79,297 - H281DRAFT_06188 0.89 -0.2 79,340 - +0.3
Or see this region's nucleotide sequence