Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06088 and H281DRAFT_06089 are separated by 191 nucleotides H281DRAFT_06089 and H281DRAFT_06090 are separated by 391 nucleotides H281DRAFT_06090 and H281DRAFT_06091 are separated by 89 nucleotides H281DRAFT_06091 and H281DRAFT_06092 are separated by 328 nucleotides
H281DRAFT_06088: H281DRAFT_06088 - Nucleoside-diphosphate-sugar epimerase, at 106,092 to 106,730
_06088
H281DRAFT_06089: H281DRAFT_06089 - hypothetical protein, at 106,922 to 107,164
_06089
H281DRAFT_06090: H281DRAFT_06090 - N-ethylmaleimide reductase, at 107,556 to 108,770
_06090
H281DRAFT_06091: H281DRAFT_06091 - Protein required for attachment to host cells, at 108,860 to 109,216
_06091
H281DRAFT_06092: H281DRAFT_06092 - Outer membrane protein (porin), at 109,545 to 110,672
_06092
Position (kb) 107
108
109 Strain fitness (log2 ratio) -2
-1
0
1
2 at 106.848 kb on - strand at 106.996 kb on + strand, within H281DRAFT_06089 at 107.229 kb on + strand at 107.230 kb on - strand at 107.230 kb on - strand at 107.290 kb on - strand at 107.451 kb on + strand at 107.452 kb on - strand at 107.461 kb on - strand at 107.649 kb on + strand at 107.650 kb on - strand at 107.716 kb on + strand, within H281DRAFT_06090 at 107.717 kb on - strand, within H281DRAFT_06090 at 107.739 kb on + strand, within H281DRAFT_06090 at 107.742 kb on + strand, within H281DRAFT_06090 at 108.082 kb on - strand, within H281DRAFT_06090 at 108.097 kb on - strand, within H281DRAFT_06090 at 108.166 kb on - strand, within H281DRAFT_06090 at 108.216 kb on + strand, within H281DRAFT_06090 at 108.217 kb on - strand, within H281DRAFT_06090 at 108.369 kb on + strand, within H281DRAFT_06090 at 108.406 kb on - strand, within H281DRAFT_06090 at 108.769 kb on - strand at 108.928 kb on + strand, within H281DRAFT_06091 at 109.031 kb on + strand, within H281DRAFT_06091 at 109.031 kb on + strand, within H281DRAFT_06091 at 109.032 kb on - strand, within H281DRAFT_06091 at 109.071 kb on + strand, within H281DRAFT_06091 at 109.235 kb on + strand at 109.236 kb on - strand at 109.236 kb on - strand at 109.245 kb on + strand at 109.324 kb on - strand at 109.337 kb on + strand at 109.430 kb on + strand at 109.495 kb on + strand at 109.539 kb on + strand at 109.626 kb on + strand at 109.626 kb on + strand at 109.653 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 106,848 - +0.2 106,996 + H281DRAFT_06089 0.30 +0.4 107,229 + +0.3 107,230 - +1.1 107,230 - -0.5 107,290 - -0.7 107,451 + +0.9 107,452 - +0.4 107,461 - -0.3 107,649 + +0.2 107,650 - +0.3 107,716 + H281DRAFT_06090 0.13 +0.6 107,717 - H281DRAFT_06090 0.13 -0.0 107,739 + H281DRAFT_06090 0.15 -0.6 107,742 + H281DRAFT_06090 0.15 +0.5 108,082 - H281DRAFT_06090 0.43 -0.0 108,097 - H281DRAFT_06090 0.45 -0.9 108,166 - H281DRAFT_06090 0.50 -0.4 108,216 + H281DRAFT_06090 0.54 -2.2 108,217 - H281DRAFT_06090 0.54 -1.6 108,369 + H281DRAFT_06090 0.67 +0.1 108,406 - H281DRAFT_06090 0.70 +1.1 108,769 - +0.1 108,928 + H281DRAFT_06091 0.19 -0.1 109,031 + H281DRAFT_06091 0.48 +0.3 109,031 + H281DRAFT_06091 0.48 +2.3 109,032 - H281DRAFT_06091 0.48 +0.4 109,071 + H281DRAFT_06091 0.59 +2.0 109,235 + +0.4 109,236 - -0.7 109,236 - +0.3 109,245 + +0.2 109,324 - -0.9 109,337 + +0.6 109,430 + +0.2 109,495 + +0.0 109,539 + -2.4 109,626 + -0.6 109,626 + +0.7 109,653 + +0.4
Or see this region's nucleotide sequence