Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05219 and H281DRAFT_05220 are separated by 66 nucleotides H281DRAFT_05220 and H281DRAFT_05221 are separated by 406 nucleotides
H281DRAFT_05219: H281DRAFT_05219 - transcriptional regulator, LysR family, at 180,758 to 181,642
_05219
H281DRAFT_05220: H281DRAFT_05220 - transcriptional regulator, AsnC family, at 181,709 to 182,167
_05220
H281DRAFT_05221: H281DRAFT_05221 - Saccharopine dehydrogenase, NADP-dependent, at 182,574 to 183,680
_05221
Position (kb) 181
182
183 Strain fitness (log2 ratio) -2
-1
0
1 at 180.730 kb on + strand at 180.731 kb on - strand at 180.752 kb on + strand at 180.953 kb on + strand, within H281DRAFT_05219 at 180.953 kb on + strand, within H281DRAFT_05219 at 181.098 kb on - strand, within H281DRAFT_05219 at 181.268 kb on + strand, within H281DRAFT_05219 at 181.295 kb on - strand, within H281DRAFT_05219 at 181.922 kb on + strand, within H281DRAFT_05220 at 181.922 kb on + strand, within H281DRAFT_05220 at 181.928 kb on + strand, within H281DRAFT_05220 at 181.928 kb on + strand, within H281DRAFT_05220 at 182.008 kb on - strand, within H281DRAFT_05220 at 182.034 kb on - strand, within H281DRAFT_05220 at 182.120 kb on - strand, within H281DRAFT_05220 at 182.484 kb on - strand at 182.532 kb on + strand at 182.532 kb on + strand at 182.574 kb on - strand at 182.574 kb on - strand at 182.845 kb on - strand, within H281DRAFT_05221 at 183.090 kb on + strand, within H281DRAFT_05221
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 180,730 + -0.4 180,731 - -0.3 180,752 + -0.1 180,953 + H281DRAFT_05219 0.22 -0.7 180,953 + H281DRAFT_05219 0.22 +1.6 181,098 - H281DRAFT_05219 0.38 -0.6 181,268 + H281DRAFT_05219 0.58 -0.0 181,295 - H281DRAFT_05219 0.61 +0.5 181,922 + H281DRAFT_05220 0.46 -0.3 181,922 + H281DRAFT_05220 0.46 -0.0 181,928 + H281DRAFT_05220 0.48 -1.8 181,928 + H281DRAFT_05220 0.48 +0.6 182,008 - H281DRAFT_05220 0.65 -2.3 182,034 - H281DRAFT_05220 0.71 -1.4 182,120 - H281DRAFT_05220 0.90 -0.1 182,484 - +0.2 182,532 + +0.9 182,532 + +0.8 182,574 - +0.1 182,574 - -1.4 182,845 - H281DRAFT_05221 0.24 +0.2 183,090 + H281DRAFT_05221 0.47 +0.4
Or see this region's nucleotide sequence