Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05095 and H281DRAFT_05096 are separated by 382 nucleotides H281DRAFT_05096 and H281DRAFT_05097 are separated by 555 nucleotides
H281DRAFT_05095: H281DRAFT_05095 - hypothetical protein, at 37,793 to 38,116
_05095
H281DRAFT_05096: H281DRAFT_05096 - hypothetical protein, at 38,499 to 38,753
_05096
H281DRAFT_05097: H281DRAFT_05097 - putative transposase, at 39,309 to 39,710
_05097
Position (kb) 38
39 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 37.510 kb on - strand at 37.529 kb on + strand at 37.538 kb on + strand at 37.543 kb on + strand at 37.543 kb on + strand at 37.544 kb on - strand at 37.544 kb on - strand at 37.544 kb on - strand at 37.544 kb on - strand at 37.575 kb on + strand at 37.611 kb on + strand at 37.620 kb on - strand at 37.620 kb on - strand at 37.620 kb on - strand at 37.756 kb on + strand at 37.756 kb on + strand at 37.756 kb on + strand at 37.757 kb on - strand at 37.757 kb on - strand at 37.757 kb on - strand at 37.757 kb on - strand at 37.767 kb on + strand at 37.802 kb on + strand at 37.802 kb on + strand at 37.803 kb on - strand at 37.886 kb on + strand, within H281DRAFT_05095 at 37.886 kb on + strand, within H281DRAFT_05095 at 37.887 kb on - strand, within H281DRAFT_05095 at 37.887 kb on - strand, within H281DRAFT_05095 at 38.060 kb on + strand, within H281DRAFT_05095 at 38.060 kb on + strand, within H281DRAFT_05095 at 38.076 kb on + strand, within H281DRAFT_05095 at 38.144 kb on + strand at 38.145 kb on - strand at 38.145 kb on - strand at 38.203 kb on + strand at 38.224 kb on + strand at 38.224 kb on + strand at 38.224 kb on + strand at 38.224 kb on + strand at 38.225 kb on - strand at 38.225 kb on - strand at 38.348 kb on + strand at 38.365 kb on + strand at 38.365 kb on + strand at 38.366 kb on - strand at 38.384 kb on + strand at 38.385 kb on - strand at 38.393 kb on + strand at 38.781 kb on + strand at 38.781 kb on + strand at 38.781 kb on + strand at 38.782 kb on - strand at 38.782 kb on - strand at 38.805 kb on - strand at 38.805 kb on - strand at 38.805 kb on - strand at 38.809 kb on + strand at 38.809 kb on + strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.834 kb on + strand at 38.834 kb on + strand at 38.834 kb on + strand at 38.835 kb on - strand at 38.838 kb on + strand at 38.844 kb on + strand at 38.845 kb on - strand at 38.952 kb on + strand at 39.099 kb on + strand at 39.100 kb on - strand at 39.100 kb on - strand at 39.265 kb on + strand at 39.265 kb on + strand at 39.310 kb on + strand at 39.462 kb on - strand, within H281DRAFT_05097 at 39.462 kb on - strand, within H281DRAFT_05097 at 39.465 kb on + strand, within H281DRAFT_05097 at 39.466 kb on - strand, within H281DRAFT_05097 at 39.466 kb on - strand, within H281DRAFT_05097 at 39.466 kb on - strand, within H281DRAFT_05097 at 39.480 kb on - strand, within H281DRAFT_05097 at 39.480 kb on - strand, within H281DRAFT_05097 at 39.730 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 37,510 - -0.2 37,529 + -0.6 37,538 + +0.7 37,543 + -0.5 37,543 + +0.1 37,544 - +0.8 37,544 - -0.8 37,544 - -0.4 37,544 - +2.8 37,575 + -0.2 37,611 + +0.0 37,620 - -2.0 37,620 - +0.9 37,620 - -0.1 37,756 + +0.3 37,756 + -1.2 37,756 + -0.4 37,757 - -0.3 37,757 - -0.3 37,757 - -0.5 37,757 - -0.9 37,767 + +0.6 37,802 + -0.1 37,802 + +2.0 37,803 - -0.5 37,886 + H281DRAFT_05095 0.29 +1.2 37,886 + H281DRAFT_05095 0.29 -0.1 37,887 - H281DRAFT_05095 0.29 -0.5 37,887 - H281DRAFT_05095 0.29 +0.5 38,060 + H281DRAFT_05095 0.82 +1.4 38,060 + H281DRAFT_05095 0.82 -0.2 38,076 + H281DRAFT_05095 0.87 -1.6 38,144 + +0.7 38,145 - +2.1 38,145 - +0.3 38,203 + +1.3 38,224 + -1.0 38,224 + +0.7 38,224 + +1.7 38,224 + +0.0 38,225 - -0.4 38,225 - +1.2 38,348 + -0.3 38,365 + +0.3 38,365 + +0.1 38,366 - +0.2 38,384 + -0.0 38,385 - -0.6 38,393 + +0.3 38,781 + +0.2 38,781 + +1.2 38,781 + -0.3 38,782 - -0.7 38,782 - -0.6 38,805 - -0.1 38,805 - +0.4 38,805 - +0.3 38,809 + +0.1 38,809 + -0.8 38,810 - +0.2 38,810 - +0.8 38,810 - +0.4 38,810 - -0.8 38,810 - -0.4 38,810 - -0.7 38,810 - -1.9 38,834 + +0.6 38,834 + +0.5 38,834 + +0.9 38,835 - -0.0 38,838 + +0.2 38,844 + +1.0 38,845 - -0.6 38,952 + +0.2 39,099 + +0.4 39,100 - +0.4 39,100 - +0.1 39,265 + +0.0 39,265 + +0.3 39,310 + -0.5 39,462 - H281DRAFT_05097 0.38 -0.3 39,462 - H281DRAFT_05097 0.38 +1.2 39,465 + H281DRAFT_05097 0.39 -1.0 39,466 - H281DRAFT_05097 0.39 +0.7 39,466 - H281DRAFT_05097 0.39 +1.3 39,466 - H281DRAFT_05097 0.39 +0.3 39,480 - H281DRAFT_05097 0.43 -0.3 39,480 - H281DRAFT_05097 0.43 +0.6 39,730 - +1.7
Or see this region's nucleotide sequence