Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05055 and H281DRAFT_05056 are separated by 370 nucleotides H281DRAFT_05056 and H281DRAFT_05057 are separated by 110 nucleotides
H281DRAFT_05055: H281DRAFT_05055 - Signal transduction histidine kinase, at 245,341 to 246,396
_05055
H281DRAFT_05056: H281DRAFT_05056 - aldehyde dehydrogenase (NAD+), at 246,767 to 248,185
_05056
H281DRAFT_05057: H281DRAFT_05057 - DNA-binding transcriptional regulator, LysR family, at 248,296 to 249,195
_05057
Position (kb) 246
247
248
249 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 245.953 kb on + strand, within H281DRAFT_05055 at 245.954 kb on - strand, within H281DRAFT_05055 at 246.086 kb on - strand, within H281DRAFT_05055 at 246.086 kb on - strand, within H281DRAFT_05055 at 246.242 kb on + strand, within H281DRAFT_05055 at 246.242 kb on + strand, within H281DRAFT_05055 at 246.486 kb on + strand at 246.502 kb on + strand at 246.503 kb on - strand at 246.606 kb on + strand at 246.606 kb on + strand at 246.606 kb on + strand at 246.607 kb on - strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.610 kb on + strand at 246.611 kb on - strand at 246.718 kb on + strand at 246.768 kb on + strand at 246.960 kb on + strand, within H281DRAFT_05056 at 246.960 kb on + strand, within H281DRAFT_05056 at 246.961 kb on - strand, within H281DRAFT_05056 at 246.975 kb on + strand, within H281DRAFT_05056 at 247.021 kb on - strand, within H281DRAFT_05056 at 247.082 kb on + strand, within H281DRAFT_05056 at 247.082 kb on + strand, within H281DRAFT_05056 at 247.082 kb on + strand, within H281DRAFT_05056 at 247.209 kb on + strand, within H281DRAFT_05056 at 247.542 kb on - strand, within H281DRAFT_05056 at 247.598 kb on - strand, within H281DRAFT_05056 at 247.651 kb on + strand, within H281DRAFT_05056 at 247.652 kb on - strand, within H281DRAFT_05056 at 247.652 kb on - strand, within H281DRAFT_05056 at 247.652 kb on - strand, within H281DRAFT_05056 at 247.675 kb on + strand, within H281DRAFT_05056 at 247.850 kb on - strand, within H281DRAFT_05056 at 247.945 kb on + strand, within H281DRAFT_05056 at 247.946 kb on - strand, within H281DRAFT_05056 at 247.973 kb on - strand, within H281DRAFT_05056 at 248.163 kb on + strand at 248.186 kb on - strand at 248.455 kb on - strand, within H281DRAFT_05057 at 248.855 kb on + strand, within H281DRAFT_05057 at 248.855 kb on + strand, within H281DRAFT_05057 at 248.856 kb on - strand, within H281DRAFT_05057 at 248.963 kb on + strand, within H281DRAFT_05057 at 248.977 kb on - strand, within H281DRAFT_05057 at 249.035 kb on - strand, within H281DRAFT_05057 at 249.035 kb on - strand, within H281DRAFT_05057 at 249.107 kb on + strand at 249.108 kb on - strand at 249.108 kb on - strand at 249.116 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 245,953 + H281DRAFT_05055 0.58 +0.3 245,954 - H281DRAFT_05055 0.58 -0.8 246,086 - H281DRAFT_05055 0.71 -0.4 246,086 - H281DRAFT_05055 0.71 +1.2 246,242 + H281DRAFT_05055 0.85 +0.6 246,242 + H281DRAFT_05055 0.85 +0.2 246,486 + -0.5 246,502 + -1.4 246,503 - -0.1 246,606 + +0.1 246,606 + -0.1 246,606 + -0.4 246,607 - -3.8 246,610 + +0.3 246,610 + -0.1 246,610 + +0.6 246,610 + -0.6 246,610 + -0.0 246,610 + +0.4 246,610 + -0.7 246,610 + -0.1 246,611 - -1.0 246,718 + -2.8 246,768 + +0.9 246,960 + H281DRAFT_05056 0.14 +0.3 246,960 + H281DRAFT_05056 0.14 +1.2 246,961 - H281DRAFT_05056 0.14 +0.3 246,975 + H281DRAFT_05056 0.15 -1.6 247,021 - H281DRAFT_05056 0.18 -0.5 247,082 + H281DRAFT_05056 0.22 +0.4 247,082 + H281DRAFT_05056 0.22 -0.2 247,082 + H281DRAFT_05056 0.22 +0.1 247,209 + H281DRAFT_05056 0.31 +0.4 247,542 - H281DRAFT_05056 0.55 +0.6 247,598 - H281DRAFT_05056 0.59 -0.2 247,651 + H281DRAFT_05056 0.62 -0.3 247,652 - H281DRAFT_05056 0.62 -0.0 247,652 - H281DRAFT_05056 0.62 -0.1 247,652 - H281DRAFT_05056 0.62 +0.2 247,675 + H281DRAFT_05056 0.64 -1.8 247,850 - H281DRAFT_05056 0.76 +0.9 247,945 + H281DRAFT_05056 0.83 +0.1 247,946 - H281DRAFT_05056 0.83 +0.2 247,973 - H281DRAFT_05056 0.85 -0.2 248,163 + -1.8 248,186 - +0.5 248,455 - H281DRAFT_05057 0.18 +0.9 248,855 + H281DRAFT_05057 0.62 +3.2 248,855 + H281DRAFT_05057 0.62 +0.9 248,856 - H281DRAFT_05057 0.62 +1.5 248,963 + H281DRAFT_05057 0.74 +1.3 248,977 - H281DRAFT_05057 0.76 +1.0 249,035 - H281DRAFT_05057 0.82 -1.7 249,035 - H281DRAFT_05057 0.82 -0.3 249,107 + +0.6 249,108 - +0.6 249,108 - +1.2 249,116 - +0.0
Or see this region's nucleotide sequence