Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04788 and H281DRAFT_04789 are separated by 19 nucleotides H281DRAFT_04789 and H281DRAFT_04790 are separated by 87 nucleotides
H281DRAFT_04788: H281DRAFT_04788 - Glycosyltransferase involved in cell wall bisynthesis, at 212,466 to 213,539
_04788
H281DRAFT_04789: H281DRAFT_04789 - hypothetical protein, at 213,559 to 214,626
_04789
H281DRAFT_04790: H281DRAFT_04790 - hypothetical protein, at 214,714 to 215,349
_04790
Position (kb) 213
214
215 Strain fitness (log2 ratio) -2
-1
0
1 at 212.578 kb on + strand, within H281DRAFT_04788 at 212.791 kb on - strand, within H281DRAFT_04788 at 212.791 kb on - strand, within H281DRAFT_04788 at 213.560 kb on + strand at 213.880 kb on + strand, within H281DRAFT_04789 at 214.291 kb on + strand, within H281DRAFT_04789 at 214.367 kb on + strand, within H281DRAFT_04789 at 214.368 kb on - strand, within H281DRAFT_04789 at 214.368 kb on - strand, within H281DRAFT_04789 at 214.368 kb on - strand, within H281DRAFT_04789 at 214.731 kb on - strand at 214.851 kb on + strand, within H281DRAFT_04790 at 215.250 kb on - strand, within H281DRAFT_04790 at 215.334 kb on - strand at 215.412 kb on - strand at 215.474 kb on + strand at 215.489 kb on + strand at 215.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 212,578 + H281DRAFT_04788 0.10 +0.6 212,791 - H281DRAFT_04788 0.30 -0.5 212,791 - H281DRAFT_04788 0.30 -2.4 213,560 + -1.1 213,880 + H281DRAFT_04789 0.30 -0.5 214,291 + H281DRAFT_04789 0.69 -0.1 214,367 + H281DRAFT_04789 0.76 -0.0 214,368 - H281DRAFT_04789 0.76 +0.5 214,368 - H281DRAFT_04789 0.76 -1.2 214,368 - H281DRAFT_04789 0.76 +0.2 214,731 - +1.1 214,851 + H281DRAFT_04790 0.22 +0.6 215,250 - H281DRAFT_04790 0.84 +1.0 215,334 - -0.0 215,412 - -1.1 215,474 + -1.1 215,489 + +0.4 215,493 - +0.6
Or see this region's nucleotide sequence