Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03762 and H281DRAFT_03763 are separated by 92 nucleotides H281DRAFT_03763 and H281DRAFT_03764 overlap by 4 nucleotides H281DRAFT_03764 and H281DRAFT_03765 overlap by 4 nucleotides
H281DRAFT_03762: H281DRAFT_03762 - TRAP transporter, DctM subunit, at 279,261 to 281,147
_03762
H281DRAFT_03763: H281DRAFT_03763 - Catechol 2,3-dioxygenase, at 281,240 to 281,779
_03763
H281DRAFT_03764: H281DRAFT_03764 - ribulose-bisphosphate carboxylase large chain, at 281,776 to 283,074
_03764
H281DRAFT_03765: H281DRAFT_03765 - Uncharacterized conserved protein YgbK, DUF1537 family, at 283,071 to 284,462
_03765
Position (kb) 281
282
283
284 Strain fitness (log2 ratio) -1
0
1 at 280.868 kb on - strand, within H281DRAFT_03762 at 281.076 kb on + strand at 281.217 kb on - strand at 281.372 kb on + strand, within H281DRAFT_03763 at 281.372 kb on + strand, within H281DRAFT_03763 at 281.393 kb on + strand, within H281DRAFT_03763 at 281.394 kb on - strand, within H281DRAFT_03763 at 281.480 kb on + strand, within H281DRAFT_03763 at 281.628 kb on - strand, within H281DRAFT_03763 at 281.628 kb on - strand, within H281DRAFT_03763 at 281.775 kb on + strand at 282.729 kb on - strand, within H281DRAFT_03764 at 282.873 kb on + strand, within H281DRAFT_03764 at 283.135 kb on - strand at 283.163 kb on + strand at 283.365 kb on + strand, within H281DRAFT_03765 at 283.677 kb on + strand, within H281DRAFT_03765 at 283.678 kb on - strand, within H281DRAFT_03765 at 283.678 kb on - strand, within H281DRAFT_03765 at 283.747 kb on + strand, within H281DRAFT_03765 at 283.861 kb on - strand, within H281DRAFT_03765 at 284.001 kb on + strand, within H281DRAFT_03765 at 284.059 kb on + strand, within H281DRAFT_03765 at 284.060 kb on - strand, within H281DRAFT_03765 at 284.060 kb on - strand, within H281DRAFT_03765
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 280,868 - H281DRAFT_03762 0.85 +0.4 281,076 + +0.5 281,217 - +0.5 281,372 + H281DRAFT_03763 0.24 -0.1 281,372 + H281DRAFT_03763 0.24 +1.7 281,393 + H281DRAFT_03763 0.28 -0.3 281,394 - H281DRAFT_03763 0.29 -0.5 281,480 + H281DRAFT_03763 0.44 -0.3 281,628 - H281DRAFT_03763 0.72 -0.6 281,628 - H281DRAFT_03763 0.72 -0.9 281,775 + -0.1 282,729 - H281DRAFT_03764 0.73 -0.5 282,873 + H281DRAFT_03764 0.84 -0.1 283,135 - -0.5 283,163 + +1.3 283,365 + H281DRAFT_03765 0.21 -0.1 283,677 + H281DRAFT_03765 0.44 -0.8 283,678 - H281DRAFT_03765 0.44 -1.6 283,678 - H281DRAFT_03765 0.44 -0.6 283,747 + H281DRAFT_03765 0.49 -0.6 283,861 - H281DRAFT_03765 0.57 -0.3 284,001 + H281DRAFT_03765 0.67 +0.2 284,059 + H281DRAFT_03765 0.71 -0.3 284,060 - H281DRAFT_03765 0.71 +0.3 284,060 - H281DRAFT_03765 0.71 -0.9
Or see this region's nucleotide sequence