Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03643

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03642 and H281DRAFT_03643 overlap by 8 nucleotidesH281DRAFT_03643 and H281DRAFT_03644 are separated by 41 nucleotides H281DRAFT_03642: H281DRAFT_03642 - acetolactate synthase-1/2/3 large subunit, at 149,883 to 151,565 _03642 H281DRAFT_03643: H281DRAFT_03643 - aspartate dehydrogenase, at 151,558 to 152,388 _03643 H281DRAFT_03644: H281DRAFT_03644 - betaine-aldehyde dehydrogenase, at 152,430 to 153,929 _03644 Position (kb) 151 152 153Strain fitness (log2 ratio) -2 -1 0 1at 150.760 kb on - strand, within H281DRAFT_03642at 150.882 kb on - strand, within H281DRAFT_03642at 150.985 kb on - strand, within H281DRAFT_03642at 151.029 kb on + strand, within H281DRAFT_03642at 151.030 kb on - strand, within H281DRAFT_03642at 151.030 kb on - strand, within H281DRAFT_03642at 151.329 kb on + strand, within H281DRAFT_03642at 151.329 kb on + strand, within H281DRAFT_03642at 151.702 kb on - strand, within H281DRAFT_03643at 153.345 kb on + strand, within H281DRAFT_03644

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
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150,760 - H281DRAFT_03642 0.52 +0.5
150,882 - H281DRAFT_03642 0.59 +0.6
150,985 - H281DRAFT_03642 0.65 -0.8
151,029 + H281DRAFT_03642 0.68 -2.4
151,030 - H281DRAFT_03642 0.68 -2.4
151,030 - H281DRAFT_03642 0.68 -0.3
151,329 + H281DRAFT_03642 0.86 +0.5
151,329 + H281DRAFT_03642 0.86 -2.2
151,702 - H281DRAFT_03643 0.17 +0.4
153,345 + H281DRAFT_03644 0.61 -1.4

Or see this region's nucleotide sequence