Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03600 and H281DRAFT_03601 are separated by 304 nucleotides H281DRAFT_03601 and H281DRAFT_03602 are separated by 570 nucleotides
H281DRAFT_03600: H281DRAFT_03600 - RNA polymerase sigma-70 factor, ECF subfamily, at 107,920 to 108,675
_03600
H281DRAFT_03601: H281DRAFT_03601 - hypothetical protein, at 108,980 to 109,111
_03601
H281DRAFT_03602: H281DRAFT_03602 - NAD(P)H-dependent FMN reductase, at 109,682 to 110,236
_03602
Position (kb) 108
109
110 Strain fitness (log2 ratio) -2
-1
0
1 at 108.096 kb on + strand, within H281DRAFT_03600 at 108.115 kb on + strand, within H281DRAFT_03600 at 108.307 kb on - strand, within H281DRAFT_03600 at 108.348 kb on + strand, within H281DRAFT_03600 at 108.348 kb on + strand, within H281DRAFT_03600 at 108.349 kb on - strand, within H281DRAFT_03600 at 108.488 kb on + strand, within H281DRAFT_03600 at 108.532 kb on - strand, within H281DRAFT_03600 at 108.667 kb on - strand at 108.667 kb on - strand at 108.675 kb on + strand at 108.675 kb on + strand at 108.675 kb on + strand at 108.893 kb on - strand at 108.923 kb on - strand at 108.923 kb on - strand at 108.974 kb on - strand at 108.974 kb on - strand at 109.086 kb on - strand, within H281DRAFT_03601 at 109.109 kb on + strand at 109.109 kb on + strand at 109.109 kb on + strand at 109.109 kb on + strand at 109.109 kb on + strand at 109.109 kb on + strand at 109.110 kb on - strand at 109.110 kb on - strand at 109.110 kb on - strand at 109.110 kb on - strand at 109.226 kb on - strand at 109.438 kb on + strand at 109.438 kb on + strand at 109.438 kb on + strand at 109.439 kb on - strand at 109.443 kb on + strand at 109.444 kb on - strand at 109.626 kb on + strand at 109.626 kb on + strand at 109.627 kb on - strand at 109.627 kb on - strand at 109.627 kb on - strand at 109.664 kb on + strand at 109.664 kb on + strand at 109.689 kb on + strand at 109.689 kb on + strand at 109.689 kb on + strand at 109.689 kb on + strand at 109.690 kb on - strand at 109.690 kb on - strand at 109.781 kb on - strand, within H281DRAFT_03602 at 109.817 kb on + strand, within H281DRAFT_03602 at 109.817 kb on + strand, within H281DRAFT_03602 at 109.818 kb on - strand, within H281DRAFT_03602 at 109.829 kb on + strand, within H281DRAFT_03602 at 109.842 kb on - strand, within H281DRAFT_03602 at 109.914 kb on - strand, within H281DRAFT_03602 at 109.935 kb on + strand, within H281DRAFT_03602 at 109.979 kb on - strand, within H281DRAFT_03602 at 109.979 kb on - strand, within H281DRAFT_03602 at 110.075 kb on + strand, within H281DRAFT_03602 at 110.076 kb on - strand, within H281DRAFT_03602
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 108,096 + H281DRAFT_03600 0.23 -0.9 108,115 + H281DRAFT_03600 0.26 +0.3 108,307 - H281DRAFT_03600 0.51 -0.6 108,348 + H281DRAFT_03600 0.57 -0.1 108,348 + H281DRAFT_03600 0.57 +0.3 108,349 - H281DRAFT_03600 0.57 -0.2 108,488 + H281DRAFT_03600 0.75 +0.0 108,532 - H281DRAFT_03600 0.81 +1.2 108,667 - +0.6 108,667 - -0.8 108,675 + +0.2 108,675 + -0.2 108,675 + +0.4 108,893 - -0.2 108,923 - +1.0 108,923 - -0.3 108,974 - +0.1 108,974 - +0.1 109,086 - H281DRAFT_03601 0.80 +0.9 109,109 + -1.0 109,109 + +0.7 109,109 + +0.0 109,109 + +0.7 109,109 + +0.4 109,109 + +1.3 109,110 - -1.7 109,110 - +0.8 109,110 - -0.3 109,110 - -0.1 109,226 - -1.9 109,438 + +0.0 109,438 + +0.0 109,438 + -0.4 109,439 - +0.6 109,443 + -0.2 109,444 - +0.3 109,626 + -0.3 109,626 + +0.5 109,627 - -0.6 109,627 - +0.4 109,627 - -1.5 109,664 + -0.1 109,664 + +0.0 109,689 + -0.2 109,689 + +0.3 109,689 + -2.1 109,689 + +0.3 109,690 - +0.8 109,690 - -0.0 109,781 - H281DRAFT_03602 0.18 -0.3 109,817 + H281DRAFT_03602 0.24 -0.6 109,817 + H281DRAFT_03602 0.24 -1.7 109,818 - H281DRAFT_03602 0.25 +0.0 109,829 + H281DRAFT_03602 0.26 -0.6 109,842 - H281DRAFT_03602 0.29 -0.0 109,914 - H281DRAFT_03602 0.42 -0.2 109,935 + H281DRAFT_03602 0.46 -0.8 109,979 - H281DRAFT_03602 0.54 -1.5 109,979 - H281DRAFT_03602 0.54 +0.3 110,075 + H281DRAFT_03602 0.71 -0.1 110,076 - H281DRAFT_03602 0.71 +0.3
Or see this region's nucleotide sequence