Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03566 and H281DRAFT_03567 are separated by 160 nucleotides H281DRAFT_03567 and H281DRAFT_03568 are separated by 26 nucleotides H281DRAFT_03568 and H281DRAFT_03569 overlap by 4 nucleotides H281DRAFT_03569 and H281DRAFT_03570 are separated by 598 nucleotides
H281DRAFT_03566: H281DRAFT_03566 - alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase, at 74,352 to 75,572
_03566
H281DRAFT_03567: H281DRAFT_03567 - transcriptional regulator, GntR family, at 75,733 to 76,458
_03567
H281DRAFT_03568: H281DRAFT_03568 - hypothetical protein, at 76,485 to 76,637
_03568
H281DRAFT_03569: H281DRAFT_03569 - hypothetical protein, at 76,634 to 76,747
_03569
H281DRAFT_03570: H281DRAFT_03570 - Sugar phosphate permease, at 77,346 to 78,677
_03570
Position (kb) 76
77 Strain fitness (log2 ratio) -1
0
1
2 at 75.561 kb on + strand at 75.851 kb on + strand, within H281DRAFT_03567 at 75.851 kb on + strand, within H281DRAFT_03567 at 75.851 kb on + strand, within H281DRAFT_03567 at 75.852 kb on - strand, within H281DRAFT_03567 at 75.852 kb on - strand, within H281DRAFT_03567 at 76.118 kb on - strand, within H281DRAFT_03567 at 76.231 kb on + strand, within H281DRAFT_03567 at 76.231 kb on + strand, within H281DRAFT_03567 at 76.231 kb on + strand, within H281DRAFT_03567 at 76.231 kb on + strand, within H281DRAFT_03567 at 76.231 kb on + strand, within H281DRAFT_03567 at 76.231 kb on + strand, within H281DRAFT_03567 at 76.233 kb on + strand, within H281DRAFT_03567 at 76.234 kb on - strand, within H281DRAFT_03567 at 76.867 kb on - strand at 76.938 kb on - strand at 77.037 kb on - strand at 77.069 kb on + strand at 77.434 kb on + strand at 77.434 kb on + strand at 77.435 kb on - strand at 77.435 kb on - strand at 77.435 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 75,561 + -0.3 75,851 + H281DRAFT_03567 0.16 +0.6 75,851 + H281DRAFT_03567 0.16 +0.7 75,851 + H281DRAFT_03567 0.16 -0.2 75,852 - H281DRAFT_03567 0.16 -0.7 75,852 - H281DRAFT_03567 0.16 +1.8 76,118 - H281DRAFT_03567 0.53 -0.1 76,231 + H281DRAFT_03567 0.69 +0.1 76,231 + H281DRAFT_03567 0.69 -1.1 76,231 + H281DRAFT_03567 0.69 -0.3 76,231 + H281DRAFT_03567 0.69 +0.5 76,231 + H281DRAFT_03567 0.69 -0.2 76,231 + H281DRAFT_03567 0.69 +0.5 76,233 + H281DRAFT_03567 0.69 +0.7 76,234 - H281DRAFT_03567 0.69 +0.6 76,867 - -1.2 76,938 - -0.6 77,037 - -0.8 77,069 + +0.0 77,434 + -0.2 77,434 + +0.4 77,435 - -0.6 77,435 - -1.3 77,435 - -0.5
Or see this region's nucleotide sequence