Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03465 and H281DRAFT_03466 are separated by 67 nucleotides H281DRAFT_03466 and H281DRAFT_03467 are separated by 155 nucleotides H281DRAFT_03467 and H281DRAFT_03468 are separated by 363 nucleotides H281DRAFT_03468 and H281DRAFT_03469 are separated by 82 nucleotides
H281DRAFT_03465: H281DRAFT_03465 - hypothetical protein, at 549,749 to 550,000
_03465
H281DRAFT_03466: H281DRAFT_03466 - transcriptional regulator, AsnC family, at 550,068 to 550,535
_03466
H281DRAFT_03467: H281DRAFT_03467 - Threonine/homoserine/homoserine lactone efflux protein, at 550,691 to 551,356
_03467
H281DRAFT_03468: H281DRAFT_03468 - small multidrug resistance family-3 protein, at 551,720 to 552,040
_03468
H281DRAFT_03469: H281DRAFT_03469 - hypothetical protein, at 552,123 to 552,632
_03469
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 549.713 kb on - strand at 550.005 kb on + strand at 550.052 kb on + strand at 550.052 kb on + strand at 550.053 kb on - strand at 550.053 kb on - strand at 550.098 kb on + strand at 550.098 kb on + strand at 550.099 kb on - strand at 550.211 kb on + strand, within H281DRAFT_03466 at 550.211 kb on + strand, within H281DRAFT_03466 at 550.211 kb on + strand, within H281DRAFT_03466 at 550.211 kb on + strand, within H281DRAFT_03466 at 550.212 kb on - strand, within H281DRAFT_03466 at 550.212 kb on - strand, within H281DRAFT_03466 at 550.213 kb on + strand, within H281DRAFT_03466 at 550.214 kb on - strand, within H281DRAFT_03466 at 550.335 kb on + strand, within H281DRAFT_03466 at 550.388 kb on - strand, within H281DRAFT_03466 at 550.517 kb on + strand at 550.517 kb on + strand at 550.718 kb on + strand at 550.718 kb on + strand at 550.719 kb on - strand at 550.719 kb on - strand at 550.719 kb on - strand at 550.719 kb on - strand at 550.721 kb on - strand at 550.787 kb on - strand, within H281DRAFT_03467 at 550.907 kb on + strand, within H281DRAFT_03467 at 550.907 kb on + strand, within H281DRAFT_03467 at 551.052 kb on + strand, within H281DRAFT_03467 at 551.052 kb on + strand, within H281DRAFT_03467 at 551.234 kb on + strand, within H281DRAFT_03467 at 551.235 kb on - strand, within H281DRAFT_03467 at 551.547 kb on + strand at 551.629 kb on - strand at 551.631 kb on + strand at 551.632 kb on - strand at 551.774 kb on + strand, within H281DRAFT_03468 at 551.774 kb on + strand, within H281DRAFT_03468 at 551.774 kb on + strand, within H281DRAFT_03468 at 551.775 kb on - strand, within H281DRAFT_03468 at 551.775 kb on - strand, within H281DRAFT_03468 at 551.894 kb on + strand, within H281DRAFT_03468 at 551.904 kb on - strand, within H281DRAFT_03468 at 551.915 kb on + strand, within H281DRAFT_03468 at 551.915 kb on + strand, within H281DRAFT_03468 at 551.916 kb on - strand, within H281DRAFT_03468 at 551.916 kb on - strand, within H281DRAFT_03468 at 551.916 kb on - strand, within H281DRAFT_03468 at 551.965 kb on + strand, within H281DRAFT_03468 at 551.965 kb on + strand, within H281DRAFT_03468 at 551.966 kb on - strand, within H281DRAFT_03468 at 552.142 kb on + strand at 552.238 kb on + strand, within H281DRAFT_03469 at 552.238 kb on + strand, within H281DRAFT_03469 at 552.338 kb on - strand, within H281DRAFT_03469 at 552.338 kb on - strand, within H281DRAFT_03469
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 549,713 - +2.2 550,005 + -0.3 550,052 + +1.5 550,052 + +0.8 550,053 - -0.3 550,053 - +1.3 550,098 + -0.6 550,098 + -0.3 550,099 - +0.3 550,211 + H281DRAFT_03466 0.31 -0.3 550,211 + H281DRAFT_03466 0.31 +1.9 550,211 + H281DRAFT_03466 0.31 +0.3 550,211 + H281DRAFT_03466 0.31 +1.1 550,212 - H281DRAFT_03466 0.31 +0.3 550,212 - H281DRAFT_03466 0.31 -0.6 550,213 + H281DRAFT_03466 0.31 +0.3 550,214 - H281DRAFT_03466 0.31 -0.4 550,335 + H281DRAFT_03466 0.57 -0.2 550,388 - H281DRAFT_03466 0.68 -0.9 550,517 + -0.1 550,517 + -0.5 550,718 + +1.6 550,718 + -0.1 550,719 - -0.1 550,719 - +0.3 550,719 - -0.3 550,719 - +0.2 550,721 - -0.4 550,787 - H281DRAFT_03467 0.14 +0.3 550,907 + H281DRAFT_03467 0.32 -0.9 550,907 + H281DRAFT_03467 0.32 -0.2 551,052 + H281DRAFT_03467 0.54 -0.2 551,052 + H281DRAFT_03467 0.54 -0.5 551,234 + H281DRAFT_03467 0.82 -0.8 551,235 - H281DRAFT_03467 0.82 +0.9 551,547 + +0.4 551,629 - +0.0 551,631 + -0.2 551,632 - +0.2 551,774 + H281DRAFT_03468 0.17 -1.3 551,774 + H281DRAFT_03468 0.17 -0.2 551,774 + H281DRAFT_03468 0.17 -0.8 551,775 - H281DRAFT_03468 0.17 +0.1 551,775 - H281DRAFT_03468 0.17 -0.5 551,894 + H281DRAFT_03468 0.54 +0.2 551,904 - H281DRAFT_03468 0.57 -0.9 551,915 + H281DRAFT_03468 0.61 -0.1 551,915 + H281DRAFT_03468 0.61 -0.1 551,916 - H281DRAFT_03468 0.61 +0.5 551,916 - H281DRAFT_03468 0.61 +0.4 551,916 - H281DRAFT_03468 0.61 -1.4 551,965 + H281DRAFT_03468 0.76 +1.5 551,965 + H281DRAFT_03468 0.76 -1.4 551,966 - H281DRAFT_03468 0.77 -0.6 552,142 + +1.1 552,238 + H281DRAFT_03469 0.23 -1.5 552,238 + H281DRAFT_03469 0.23 +0.6 552,338 - H281DRAFT_03469 0.42 -3.0 552,338 - H281DRAFT_03469 0.42 +0.8
Or see this region's nucleotide sequence