Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03265 and H281DRAFT_03266 are separated by 52 nucleotides H281DRAFT_03266 and H281DRAFT_03267 are separated by 29 nucleotides H281DRAFT_03267 and H281DRAFT_03268 are separated by 90 nucleotides
H281DRAFT_03265: H281DRAFT_03265 - Predicted arabinose efflux permease, MFS family, at 322,380 to 323,720
_03265
H281DRAFT_03266: H281DRAFT_03266 - Nicotinamidase-related amidase, at 323,773 to 324,336
_03266
H281DRAFT_03267: H281DRAFT_03267 - transcriptional regulator, MarR family, at 324,366 to 324,818
_03267
H281DRAFT_03268: H281DRAFT_03268 - diguanylate cyclase/phosphodiesterase, at 324,909 to 326,843
_03268
Position (kb) 323
324
325 Strain fitness (log2 ratio) -1
0
1 at 323.006 kb on + strand, within H281DRAFT_03265 at 323.393 kb on - strand, within H281DRAFT_03265 at 323.426 kb on + strand, within H281DRAFT_03265 at 323.530 kb on - strand, within H281DRAFT_03265 at 323.572 kb on - strand, within H281DRAFT_03265 at 323.642 kb on + strand at 323.643 kb on - strand at 323.683 kb on + strand at 324.027 kb on + strand, within H281DRAFT_03266 at 325.325 kb on + strand, within H281DRAFT_03268 at 325.326 kb on - strand, within H281DRAFT_03268
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 323,006 + H281DRAFT_03265 0.47 +0.1 323,393 - H281DRAFT_03265 0.76 +0.7 323,426 + H281DRAFT_03265 0.78 -0.5 323,530 - H281DRAFT_03265 0.86 +0.4 323,572 - H281DRAFT_03265 0.89 -0.9 323,642 + -0.1 323,643 - +0.6 323,683 + -0.2 324,027 + H281DRAFT_03266 0.45 -0.8 325,325 + H281DRAFT_03268 0.21 +1.4 325,326 - H281DRAFT_03268 0.22 +0.5
Or see this region's nucleotide sequence