Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03066 and H281DRAFT_03067 are separated by 123 nucleotides H281DRAFT_03067 and H281DRAFT_03068 are separated by 53 nucleotides H281DRAFT_03068 and H281DRAFT_03069 are separated by 447 nucleotides H281DRAFT_03069 and H281DRAFT_03070 overlap by 4 nucleotides H281DRAFT_03070 and H281DRAFT_03071 are separated by 7 nucleotides
H281DRAFT_03066: H281DRAFT_03066 - transcriptional regulator, LysR family, at 97,985 to 98,911
_03066
H281DRAFT_03067: H281DRAFT_03067 - peroxiredoxin, Ohr subfamily, at 99,035 to 99,451
_03067
H281DRAFT_03068: H281DRAFT_03068 - hypothetical protein, at 99,505 to 99,732
_03068
H281DRAFT_03069: H281DRAFT_03069 - Uncharacterized conserved protein, at 100,180 to 100,551
_03069
H281DRAFT_03070: H281DRAFT_03070 - hypothetical protein, at 100,548 to 100,670
_03070
H281DRAFT_03071: H281DRAFT_03071 - two-component system, OmpR family, response regulator, at 100,678 to 101,418
_03071
Position (kb) 99
100 Strain fitness (log2 ratio) -1
0
1
2 at 98.782 kb on + strand, within H281DRAFT_03066 at 98.783 kb on - strand, within H281DRAFT_03066 at 98.953 kb on - strand at 98.977 kb on - strand at 98.993 kb on + strand at 99.017 kb on - strand at 99.017 kb on - strand at 99.085 kb on - strand, within H281DRAFT_03067 at 99.467 kb on - strand at 99.469 kb on + strand at 99.507 kb on - strand at 99.507 kb on - strand at 99.507 kb on - strand at 99.724 kb on + strand at 99.850 kb on + strand at 99.866 kb on - strand at 99.908 kb on - strand at 99.908 kb on - strand at 100.089 kb on - strand at 100.123 kb on + strand at 100.145 kb on + strand at 100.364 kb on - strand, within H281DRAFT_03069 at 100.697 kb on + strand at 100.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 98,782 + H281DRAFT_03066 0.86 -1.1 98,783 - H281DRAFT_03066 0.86 -0.4 98,953 - -0.3 98,977 - -0.7 98,993 + +0.5 99,017 - -0.2 99,017 - -1.6 99,085 - H281DRAFT_03067 0.12 +0.3 99,467 - +0.6 99,469 + +1.8 99,507 - -1.6 99,507 - +0.2 99,507 - +1.2 99,724 + +0.2 99,850 + -0.4 99,866 - -1.2 99,908 - -1.1 99,908 - +0.3 100,089 - -0.2 100,123 + -0.0 100,145 + -0.1 100,364 - H281DRAFT_03069 0.49 -0.7 100,697 + -1.2 100,698 - +0.6
Or see this region's nucleotide sequence