Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02894 and H281DRAFT_02895 are separated by 42 nucleotides H281DRAFT_02895 and H281DRAFT_02896 are separated by 56 nucleotides H281DRAFT_02896 and H281DRAFT_02897 are separated by 161 nucleotides
H281DRAFT_02894: H281DRAFT_02894 - Acetyltransferases, at 497,535 to 497,981
_02894
H281DRAFT_02895: H281DRAFT_02895 - prolyl 4-hydroxylase, at 498,024 to 498,920
_02895
H281DRAFT_02896: H281DRAFT_02896 - Ketosteroid isomerase-related protein, at 498,977 to 499,456
_02896
H281DRAFT_02897: H281DRAFT_02897 - nicotinamide phosphoribosyltransferase, at 499,618 to 501,066
_02897
Position (kb) 498
499
500 Strain fitness (log2 ratio) -1
0
1
2 at 498.269 kb on + strand, within H281DRAFT_02895 at 498.305 kb on - strand, within H281DRAFT_02895 at 498.340 kb on + strand, within H281DRAFT_02895 at 498.340 kb on + strand, within H281DRAFT_02895 at 498.647 kb on + strand, within H281DRAFT_02895 at 498.647 kb on + strand, within H281DRAFT_02895 at 498.648 kb on - strand, within H281DRAFT_02895 at 498.648 kb on - strand, within H281DRAFT_02895 at 498.920 kb on + strand at 498.920 kb on + strand at 498.921 kb on - strand at 498.921 kb on - strand at 498.985 kb on + strand at 499.420 kb on - strand at 499.441 kb on + strand at 499.580 kb on - strand at 499.580 kb on - strand at 499.619 kb on + strand at 499.873 kb on - strand, within H281DRAFT_02897 at 500.137 kb on - strand, within H281DRAFT_02897 at 500.137 kb on - strand, within H281DRAFT_02897 at 500.167 kb on + strand, within H281DRAFT_02897 at 500.244 kb on - strand, within H281DRAFT_02897 at 500.394 kb on - strand, within H281DRAFT_02897
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 498,269 + H281DRAFT_02895 0.27 -0.3 498,305 - H281DRAFT_02895 0.31 -0.8 498,340 + H281DRAFT_02895 0.35 +1.1 498,340 + H281DRAFT_02895 0.35 -0.9 498,647 + H281DRAFT_02895 0.69 -0.6 498,647 + H281DRAFT_02895 0.69 +1.9 498,648 - H281DRAFT_02895 0.70 +0.6 498,648 - H281DRAFT_02895 0.70 +0.3 498,920 + -1.5 498,920 + +0.9 498,921 - -0.2 498,921 - +0.2 498,985 + -0.1 499,420 - -0.3 499,441 + +0.1 499,580 - -0.6 499,580 - +1.3 499,619 + +2.0 499,873 - H281DRAFT_02897 0.18 +0.2 500,137 - H281DRAFT_02897 0.36 -0.5 500,137 - H281DRAFT_02897 0.36 -0.2 500,167 + H281DRAFT_02897 0.38 +0.5 500,244 - H281DRAFT_02897 0.43 +1.0 500,394 - H281DRAFT_02897 0.54 +0.4
Or see this region's nucleotide sequence