Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02815 and H281DRAFT_02816 overlap by 4 nucleotides H281DRAFT_02816 and H281DRAFT_02817 are separated by 207 nucleotides
H281DRAFT_02814: H281DRAFT_02814 - xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC 1.17.1.4), at 404,223 to 406,472
_02814
H281DRAFT_02815: H281DRAFT_02815 - xanthine dehydrogenase YagS FAD-binding subunit, at 406,469 to 407,473
_02815
H281DRAFT_02816: H281DRAFT_02816 - xanthine dehydrogenase YagT iron-sulfur-binding subunit, at 407,470 to 408,012
_02816
H281DRAFT_02817: H281DRAFT_02817 - hypothetical protein, at 408,220 to 409,086
_02817
Position (kb) 407
408
409 Strain fitness (log2 ratio) -1
0
1 at 406.764 kb on + strand, within H281DRAFT_02815 at 406.765 kb on - strand, within H281DRAFT_02815 at 406.791 kb on + strand, within H281DRAFT_02815 at 406.791 kb on + strand, within H281DRAFT_02815 at 406.791 kb on + strand, within H281DRAFT_02815 at 406.791 kb on + strand, within H281DRAFT_02815 at 406.792 kb on - strand, within H281DRAFT_02815 at 406.792 kb on - strand, within H281DRAFT_02815 at 407.052 kb on - strand, within H281DRAFT_02815 at 407.113 kb on - strand, within H281DRAFT_02815 at 407.544 kb on - strand, within H281DRAFT_02816 at 408.221 kb on + strand at 408.270 kb on - strand at 408.270 kb on - strand at 408.677 kb on + strand, within H281DRAFT_02817 at 408.678 kb on - strand, within H281DRAFT_02817 at 408.689 kb on + strand, within H281DRAFT_02817 at 408.689 kb on + strand, within H281DRAFT_02817
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 406,764 + H281DRAFT_02815 0.29 -0.4 406,765 - H281DRAFT_02815 0.29 +1.4 406,791 + H281DRAFT_02815 0.32 -0.0 406,791 + H281DRAFT_02815 0.32 +1.2 406,791 + H281DRAFT_02815 0.32 -0.3 406,791 + H281DRAFT_02815 0.32 +0.5 406,792 - H281DRAFT_02815 0.32 -0.5 406,792 - H281DRAFT_02815 0.32 -1.0 407,052 - H281DRAFT_02815 0.58 -1.0 407,113 - H281DRAFT_02815 0.64 -0.1 407,544 - H281DRAFT_02816 0.14 +0.0 408,221 + -1.2 408,270 - +0.5 408,270 - +0.4 408,677 + H281DRAFT_02817 0.53 +0.7 408,678 - H281DRAFT_02817 0.53 +1.4 408,689 + H281DRAFT_02817 0.54 +0.6 408,689 + H281DRAFT_02817 0.54 +0.4
Or see this region's nucleotide sequence