Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02750 and H281DRAFT_02751 overlap by 4 nucleotides H281DRAFT_02751 and H281DRAFT_02752 overlap by 4 nucleotides H281DRAFT_02752 and H281DRAFT_02753 are separated by 62 nucleotides
H281DRAFT_02750: H281DRAFT_02750 - hypothetical protein, at 338,509 to 339,222
_02750
H281DRAFT_02751: H281DRAFT_02751 - carboxylesterase, at 339,219 to 340,106
_02751
H281DRAFT_02752: H281DRAFT_02752 - Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family, at 340,103 to 340,909
_02752
H281DRAFT_02753: H281DRAFT_02753 - Predicted dehydrogenase, at 340,972 to 342,306
_02753
Position (kb) 340
341 Strain fitness (log2 ratio) -1
0
1
2
3 at 339.247 kb on + strand at 339.374 kb on + strand, within H281DRAFT_02751 at 339.467 kb on + strand, within H281DRAFT_02751 at 339.468 kb on - strand, within H281DRAFT_02751 at 339.616 kb on - strand, within H281DRAFT_02751 at 339.919 kb on - strand, within H281DRAFT_02751 at 340.289 kb on - strand, within H281DRAFT_02752 at 340.509 kb on - strand, within H281DRAFT_02752 at 340.724 kb on + strand, within H281DRAFT_02752 at 340.724 kb on + strand, within H281DRAFT_02752 at 340.775 kb on + strand, within H281DRAFT_02752 at 340.835 kb on + strand at 340.907 kb on + strand at 341.487 kb on - strand, within H281DRAFT_02753 at 341.818 kb on - strand, within H281DRAFT_02753
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 339,247 + +0.0 339,374 + H281DRAFT_02751 0.17 -1.3 339,467 + H281DRAFT_02751 0.28 +0.6 339,468 - H281DRAFT_02751 0.28 -0.5 339,616 - H281DRAFT_02751 0.45 +0.1 339,919 - H281DRAFT_02751 0.79 +1.1 340,289 - H281DRAFT_02752 0.23 +0.1 340,509 - H281DRAFT_02752 0.50 +0.5 340,724 + H281DRAFT_02752 0.77 +0.2 340,724 + H281DRAFT_02752 0.77 +0.5 340,775 + H281DRAFT_02752 0.83 +3.4 340,835 + +1.1 340,907 + +0.5 341,487 - H281DRAFT_02753 0.39 +1.2 341,818 - H281DRAFT_02753 0.63 -0.6
Or see this region's nucleotide sequence