Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02556 and H281DRAFT_02557 are separated by 74 nucleotides H281DRAFT_02557 and H281DRAFT_02558 are separated by 336 nucleotides H281DRAFT_02558 and H281DRAFT_02559 overlap by 8 nucleotides
H281DRAFT_02556: H281DRAFT_02556 - Outer membrane protein (porin), at 129,128 to 130,351
_02556
H281DRAFT_02557: H281DRAFT_02557 - Beta-barrel assembly machine subunit BamA, at 130,426 to 132,735
_02557
H281DRAFT_02558: H281DRAFT_02558 - hypothetical protein, at 133,072 to 133,248
_02558
H281DRAFT_02559: H281DRAFT_02559 - hypothetical protein, at 133,241 to 133,630
_02559
Position (kb) 130
131
132
133 Strain fitness (log2 ratio) -1
0
1 at 129.512 kb on + strand, within H281DRAFT_02556 at 129.681 kb on - strand, within H281DRAFT_02556 at 130.428 kb on - strand at 130.584 kb on + strand at 130.601 kb on - strand at 130.787 kb on + strand, within H281DRAFT_02557 at 130.787 kb on + strand, within H281DRAFT_02557 at 130.913 kb on + strand, within H281DRAFT_02557 at 131.116 kb on + strand, within H281DRAFT_02557 at 131.133 kb on - strand, within H281DRAFT_02557 at 131.216 kb on + strand, within H281DRAFT_02557 at 132.023 kb on + strand, within H281DRAFT_02557 at 132.074 kb on - strand, within H281DRAFT_02557 at 132.074 kb on - strand, within H281DRAFT_02557 at 133.392 kb on + strand, within H281DRAFT_02559
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 129,512 + H281DRAFT_02556 0.31 -0.3 129,681 - H281DRAFT_02556 0.45 -0.5 130,428 - -0.7 130,584 + +0.1 130,601 - +1.0 130,787 + H281DRAFT_02557 0.16 +0.2 130,787 + H281DRAFT_02557 0.16 -0.1 130,913 + H281DRAFT_02557 0.21 -0.5 131,116 + H281DRAFT_02557 0.30 +0.9 131,133 - H281DRAFT_02557 0.31 -0.6 131,216 + H281DRAFT_02557 0.34 -0.7 132,023 + H281DRAFT_02557 0.69 +0.7 132,074 - H281DRAFT_02557 0.71 +1.2 132,074 - H281DRAFT_02557 0.71 +0.3 133,392 + H281DRAFT_02559 0.39 -0.7
Or see this region's nucleotide sequence